Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0807
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15352.1 68416.m01943 cytochrome c oxidase copper chaperone-r...    70   9e-13
At1g53030.1 68414.m06003 cytochrome c oxidase copper chaperone f...    65   3e-11
At2g21340.2 68415.m02540 enhanced disease susceptibility protein...    29   2.8  
At2g21340.1 68415.m02539 enhanced disease susceptibility protein...    29   2.8  
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi...    29   2.8  
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    27   6.5  
At4g23070.1 68417.m03326 rhomboid family protein contains PFAM d...    27   8.6  

>At3g15352.1 68416.m01943 cytochrome c oxidase copper
           chaperone-related contains similarity to cytochrome c
           oxidase copper chaperone [Mus musculus]
           SWISS-PROT:P56394
          Length = 74

 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = +1

Query: 139 KPKLKPCCACPETKRARDACIIENGEENCGPLIEEHKACMRKMGFNI 279
           KPK + CCACP+TK+ RD CI+E+GE  C   IE HK C+R  GFN+
Sbjct: 28  KPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHKICLRAEGFNV 74


>At1g53030.1 68414.m06003 cytochrome c oxidase copper chaperone
           family protein contains Pfam domian, PF05051: Cytochrome
           C oxidase copper chaperone (COX17)
          Length = 72

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 25/47 (53%), Positives = 32/47 (68%)
 Frame = +1

Query: 139 KPKLKPCCACPETKRARDACIIENGEENCGPLIEEHKACMRKMGFNI 279
           KPK + CCACP+TK+ RD CI+E+GE  C   IE H  C+R  GF +
Sbjct: 26  KPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHILCLRSEGFKV 72


>At2g21340.2 68415.m02540 enhanced disease susceptibility protein,
           putative / salicylic acid induction deficient protein,
           putative similar to enhanced disease susceptibility 5
           [Arabidopsis thaliana] GI:16589070
          Length = 552

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 143 GFSTFSGAGPSKTLTSTALALAFPIFQEVFSHMMQFNLLFF 21
           G+S FS   PS +   T   LA P+F  + S ++ + LL +
Sbjct: 315 GYSAFSFCVPSPSELLTIFGLAAPVFITMMSKVLFYTLLVY 355


>At2g21340.1 68415.m02539 enhanced disease susceptibility protein,
           putative / salicylic acid induction deficient protein,
           putative similar to enhanced disease susceptibility 5
           [Arabidopsis thaliana] GI:16589070
          Length = 555

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 143 GFSTFSGAGPSKTLTSTALALAFPIFQEVFSHMMQFNLLFF 21
           G+S FS   PS +   T   LA P+F  + S ++ + LL +
Sbjct: 318 GYSAFSFCVPSPSELLTIFGLAAPVFITMMSKVLFYTLLVY 358


>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
           similarity to copper homeostasis factor
           [GI:3168840][PMID:9701579] and farnesylated proteins
           ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
           contains PF00403 Heavy-metal-associated domain
          Length = 364

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 127 ENVEKPKLKPCCACPETKRARDACIIENGEENCGPLIEEHKACMRK 264
           +N EKP    C      K   + C+  +G E  GP+ EE K  +++
Sbjct: 145 DNPEKPGSGECDKPESEKPVDEKCLSGDGGETSGPVKEEKKDVLKE 190


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 205 ENGEENCGPLIEEHKACMRKMGFN 276
           ENG +  GPL EE  A MR++GFN
Sbjct: 430 ENGPK--GPLWEEISAGMRRLGFN 451


>At4g23070.1 68417.m03326 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 313

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
 Frame = -1

Query: 401 MWIINLFFFFHIGTDLLTNKQCCRRYFVANNTLIENSV*L*ILNPIFLIQALCSSISGPQ 222
           +W +    + H G   L    CC  Y       +E       +  I+L+   C SI    
Sbjct: 104 VWRLLTCMWLHAGVIHLLANMCCVAYI---GVRLEQQFGFVRVGTIYLVSGFCGSILSCL 160

Query: 221 FSSPFSIMHASRALF-VSGQAQQGFSLGFSTFSGAG 117
           F      + AS ALF + G       + ++T+   G
Sbjct: 161 FLEDAISVGASSALFGLLGAMLSELLINWTTYDNKG 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,432,466
Number of Sequences: 28952
Number of extensions: 188441
Number of successful extensions: 410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)