Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0805
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    32   0.071
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    28   1.5  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   4.7  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   4.7  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   6.2  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    25   8.2  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.2  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
 Frame = +1

Query: 181 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKKY 333
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S   Y
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEAS---Y 198

Query: 334 IEGTAKLTDDANKAAKL 384
            E   + TDD   A  L
Sbjct: 199 QEQRNQTTDDIWSAGNL 215


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 457 YAIAYNCKYDDKKKSHQVFV-WILSRNKKLEGDAKTAVDNFIKGALQ 594
           +  +Y+ K D KK + +V   WI +R  +L G     V NF+ G L+
Sbjct: 29  FPASYDTKVDMKKVNIEVLKPWIATRLNELIGFEDEVVINFVYGMLE 75


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 590 SKEIDSSKLVHTDFSEEACKFTSSSVITEHGKH 688
           +KEI+SSK   TD   E   FT  +  + +  H
Sbjct: 96  AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 497 SPIKCSSGSSL-ETRSLKATLKLLSIISSREHSKEIDSSK 613
           +P K ++ + L E +SLK T K LS ISS    K  +SSK
Sbjct: 150 NPQKGNNNNLLKENKSLKTTAKDLSDISSSSMKKANNSSK 189


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 178 FYFVGFQNSEVMINRDNWGHSYCDVRGEILGSSQD-EHQRKHLPKVFSSIKKYIE 339
           FY    + +E +I  D    S+  +  E+L    D EH+RKH  K    + K ++
Sbjct: 151 FYIKNLEKTEDLIRTD----SHFVLNKELLSFRNDYEHRRKHYEKYSQCLNKQLD 201


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 517 WILSRNKKLEGDAKTAVDNFIKGALQRDRLFETCAYRFFRG 639
           W L     L+ D  TA+DN  +  L  D+   T    F  G
Sbjct: 70  WTLGLRHALDADHITAIDNLTRRLLSTDKPMSTVGTWFSIG 110


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 226 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTDD 363
           NW   +  ++G I  SSQ E    +L KV  SI   I  +  L  D
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDEIADSLVLKTD 167


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 301 LPKVFSSIKKYIEGTAKLTDDAN 369
           L K   SIKKY+ G AK  D+ N
Sbjct: 634 LEKERESIKKYLSGNAKDLDNTN 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,967
Number of Sequences: 5004
Number of extensions: 54704
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)