Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0805
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020...    29   3.7  
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366...    29   4.9  
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794...    28   8.5  
07_01_0111 - 833779-834510                                             28   8.5  

>03_02_0829 -
           11599665-11600364,11600853-11601076,11601786-11602000,
           11602300-11602377,11602593-11603907
          Length = 843

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 256 GEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTD 360
           GE+ G   + H+  H   + SS++ ++EG A+ +D
Sbjct: 779 GELNGEMSEIHRNSHTTDLQSSLETFLEGFAEFSD 813


>05_01_0463 -
           3666626-3666933,3667060-3667258,3667388-3667629,
           3667823-3669035
          Length = 653

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 472 NCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDN 573
           +CK D     H  +  +   N+ LEGD ++ +DN
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDN 589


>07_03_1384 +
           26177053-26177227,26178754-26178823,26179427-26179469,
           26179888-26179965,26180010-26180027,26180103-26180187,
           26180273-26180355,26180489-26180546,26181258-26181368,
           26181769-26181826,26182005-26182101,26182585-26182620,
           26183107-26183137,26183993-26184046,26184159-26184301,
           26184411-26184560,26185084-26185317,26185450-26185509,
           26185974-26186204,26186829-26186981
          Length = 655

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 26/78 (33%), Positives = 35/78 (44%)
 Frame = +1

Query: 364 ANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKL 543
           A K  +LT  +  GE+ +      LATDY+  A       DD  KS ++F+    RN   
Sbjct: 413 ALKDDRLTFVWLDGEVQKKLCAFYLATDYSG-ACGPGGFGDDNDKS-ELFIVRFQRNATF 470

Query: 544 EGDAKTAVDNFIKGALQR 597
           E   K    N +  ALQR
Sbjct: 471 EA-LKAEKTNNLMEALQR 487


>07_01_0111 - 833779-834510
          Length = 243

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 662 WSW*ICRLPLKNRYAQVSKSLSLWSAPLMKL 570
           WSW +C   + NR +    +L LWS  ++K+
Sbjct: 15  WSWWLCASMMGNRSSGGGFTLPLWSQRVVKI 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,452,811
Number of Sequences: 37544
Number of extensions: 329653
Number of successful extensions: 856
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)