Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0805
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.004
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.10 
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.13 
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.13 
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_14350| Best HMM Match : DUF1208 (HMM E-Value=0)                     33   0.23 
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    32   0.53 
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.53 
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_30095| Best HMM Match : HCV_core (HMM E-Value=1.7)                  29   3.8  
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              29   5.0  
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)                    28   8.7  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +3

Query: 264 SWIVARRTSAKAFAKGVFINQE 329
           SWI  RRT+AKAFAK VFINQE
Sbjct: 4   SWIYERRTTAKAFAKNVFINQE 25


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 257 VKFLDRRKTNISESICQRCF-HQSRSI*KGRPSSPTM 364
           VKFLD RKTN  ESICQ CF +Q R +   R S   +
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVL 38


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 257 VKFLDRRKTNISESICQRCF-HQSRSI*KGRPSSPTM 364
           VKFLD RKTN  ESICQ CF +Q R +   R S   +
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVL 38


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 257 VKFLDRRKTNISESICQRCF-HQSRSI*KGRPSSPTM 364
           VKFLD RKTN  ESICQ  F +Q R +   R S   +
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKLEDRRRSDTVL 38


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 279 RRTSAKAFAKGVFINQE 329
           RRT+AKAFAK VFINQE
Sbjct: 9   RRTTAKAFAKNVFINQE 25


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 279 RRTSAKAFAKGVFINQE 329
           RRT+AKAFAK VFINQE
Sbjct: 9   RRTTAKAFAKNVFINQE 25


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 279 RRTSAKAFAKGVFINQE 329
           RRT+AKAFAK VFINQE
Sbjct: 9   RRTTAKAFAKNVFINQE 25


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 279 RRTSAKAFAKGVFINQE 329
           RRT+AKAFAK VFINQE
Sbjct: 11  RRTTAKAFAKNVFINQE 27


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/96 (19%), Positives = 47/96 (48%)
 Frame = +1

Query: 220  RDNWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTDDANKAAKLTVTFK 399
            ++++  S  D  GE L   + EHQRKH+      +   ++  + +   ++K +  +++ +
Sbjct: 1995 KEDYNSSSSDDMGEPLKLDKFEHQRKHVSLAIGGLLSALDKQSTVLRGSSKTSHSSLSSQ 2054

Query: 400  FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQ 507
             GE+ +  S++ +   Y    I+ +  ++   KS +
Sbjct: 2055 -GEVQKGESIKPVNPTYQPKKISSSVSFERSDKSQK 2089


>SB_14350| Best HMM Match : DUF1208 (HMM E-Value=0)
          Length = 280

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 298 HLPKVFSSIKKYIEGTAKLTDDANKAAKLTVTFKFGE 408
           H PK+ SS+++Y  GTAKL D  ++  K    +   E
Sbjct: 42  HFPKIVSSLQRYAYGTAKLRDKGDELYKSIAAYAENE 78


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 400 FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAK--TAVDN 573
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+        K  T   +
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSKQSPSGAFPKVGTVHSS 563

Query: 574 FIKGAL 591
           ++KGA+
Sbjct: 564 YLKGAI 569


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 282 RTSAKAFAKGVFINQE 329
           RT+AKAFAK VFINQE
Sbjct: 2   RTTAKAFAKNVFINQE 17


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 282 RTSAKAFAKGVFINQE 329
           RT+AKAFAK VFINQE
Sbjct: 29  RTTAKAFAKNVFINQE 44


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 260 KFLDRRKTNISESICQRCF-HQSRSI*KGRPSSPTM 364
           + L  RKTN  ESICQ CF +Q R +   R S   +
Sbjct: 3   EILGFRKTNYCESICQECFINQERKLEDRRRSDTVL 38


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 257 VKFLDRRKTNISESICQRCF-HQSRSI*KGRPSSPTM 364
           VKFLD RKTN  ESI +  F +Q R +   R S   +
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKLEDRRRSDTVL 38


>SB_30095| Best HMM Match : HCV_core (HMM E-Value=1.7)
          Length = 136

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 491 RKSPIKCSSGSSLETRSLKATLKLLSIISSREHSKEID 604
           RKS  KC  G S+  +SL  T+KL+   +S+EH + I+
Sbjct: 22  RKSKGKC--GDSIVHQSLSHTIKLIIKFTSKEHGEIIE 57


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 400 FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 531
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 245


>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 196 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 306
           Q  EV  +++  GH Y C   GE++ S++D H+   +P
Sbjct: 7   QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44


>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
          Length = 395

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
 Frame = +1

Query: 343 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QILATDYNNYAIAYNCKYDDKKKSHQVF 513
           T ++T+  +      + FK    EIS+ G+V +++ATD  +  I  + K +  +  HQ  
Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187

Query: 514 VWILSRN--KKLEGDAK 558
           VW ++++  KKL   AK
Sbjct: 188 VWHMAKSVTKKLTEAAK 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,374,515
Number of Sequences: 59808
Number of extensions: 388298
Number of successful extensions: 1122
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)