Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0805
(717 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 44 7e-04
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 44 7e-04
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 44 7e-04
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 44 7e-04
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 44 7e-04
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 44 7e-04
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 44 7e-04
S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein. 42 0.002
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 43.6 bits (98), Expect = 7e-04
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = +1
Query: 334 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVF 513
IEG A + + AKL V KF ILATDY NYA+ Y+C + H F
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDF 145
Query: 514 VWILSRNKKLEGDAKTAVDNFI 579
WIL+RN L + ++ N +
Sbjct: 146 AWILARNPNLPPETVDSLKNIL 167
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 43.6 bits (98), Expect = 7e-04
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = +1
Query: 334 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVF 513
IEG A + + AKL V KF ILATDY NYA+ Y+C + H F
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDF 145
Query: 514 VWILSRNKKLEGDAKTAVDNFI 579
WIL+RN L + ++ N +
Sbjct: 146 AWILARNPNLPPETVDSLKNIL 167
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 43.6 bits (98), Expect = 7e-04
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = +1
Query: 334 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVF 513
IEG A + + AKL V KF ILATDY NYA+ Y+C + H F
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDF 145
Query: 514 VWILSRNKKLEGDAKTAVDNFI 579
WIL+RN L + ++ N +
Sbjct: 146 AWILARNPNLPPETVDSLKNIL 167
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 43.6 bits (98), Expect = 7e-04
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = +1
Query: 334 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVF 513
IEG A + + AKL V KF ILATDY NYA+ Y+C + H F
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDF 145
Query: 514 VWILSRNKKLEGDAKTAVDNFI 579
WIL+RN L + ++ N +
Sbjct: 146 AWILARNPNLPPETVDSLKNIL 167
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 43.6 bits (98), Expect = 7e-04
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = +1
Query: 334 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVF 513
IEG A + + AKL V KF ILATDY NYA+ Y+C + H F
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDF 145
Query: 514 VWILSRNKKLEGDAKTAVDNFI 579
WIL+RN L + ++ N +
Sbjct: 146 AWILARNPNLPPETVDSLKNIL 167
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 43.6 bits (98), Expect = 7e-04
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = +1
Query: 334 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVF 513
IEG A + + AKL V KF ILATDY NYA+ Y+C + H F
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDF 145
Query: 514 VWILSRNKKLEGDAKTAVDNFI 579
WIL+RN L + ++ N +
Sbjct: 146 AWILARNPNLPPETVDSLKNIL 167
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 43.6 bits (98), Expect = 7e-04
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = +1
Query: 334 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVF 513
IEG A + + AKL V KF ILATDY NYA+ Y+C + H F
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDF 145
Query: 514 VWILSRNKKLEGDAKTAVDNFI 579
WIL+RN L + ++ N +
Sbjct: 146 AWILARNPNLPPETVDSLKNIL 167
>S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein.
Length = 98
Score = 42.3 bits (95), Expect = 0.002
Identities = 26/68 (38%), Positives = 34/68 (50%)
Frame = +1
Query: 376 AKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA 555
AKL V KF ILATDY NYA+ Y+C + H F WIL+RN L +
Sbjct: 12 AKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPET 68
Query: 556 KTAVDNFI 579
++ N +
Sbjct: 69 VDSLKNIL 76
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,627,806
Number of Sequences: 237096
Number of extensions: 1823542
Number of successful extensions: 4323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4315
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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