Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0805
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    34   0.088
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    34   0.088
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    34   0.088
U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U64852-3|ABH03525.1|  740|Caenorhabditis elegans Uncoordinated p...    28   7.7  
U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated p...    28   7.7  
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p...    28   7.7  
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.     28   7.7  

>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 379 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 537
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 379 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 537
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 379 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 537
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical
           protein C09B9.1 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 505 QVFVWILSRNKKLEGDAKTAVDNFIKGALQRDRLFETCAY 624
           Q+F+ I+   ++L G+A T+VD  I+ A  R RL  T AY
Sbjct: 217 QIFISIVVAMRELPGEAATSVDMQIRDA--RSRLAWTLAY 254


>U64852-3|ABH03525.1|  740|Caenorhabditis elegans Uncoordinated
           protein 83, isoform c protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 205 EVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTDDAN 369
           E+   R N   + C+     LGS Q+E   K+LP   + +  Y    A+L D  N
Sbjct: 594 ELCQERMNSLETMCNYLTASLGSIQNESNSKNLPDFKAELSIYSNALARLKDRFN 648


>U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated
           protein 83, isoform b protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 205 EVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTDDAN 369
           E+   R N   + C+     LGS Q+E   K+LP   + +  Y    A+L D  N
Sbjct: 829 ELCQERMNSLETMCNYLTASLGSIQNESNSKNLPDFKAELSIYSNALARLKDRFN 883


>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
            protein 83, isoform a protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 205  EVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTDDAN 369
            E+   R N   + C+     LGS Q+E   K+LP   + +  Y    A+L D  N
Sbjct: 895  ELCQERMNSLETMCNYLTASLGSIQNESNSKNLPDFKAELSIYSNALARLKDRFN 949


>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 205  EVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTDDAN 369
            E+   R N   + C+     LGS Q+E   K+LP   + +  Y    A+L D  N
Sbjct: 895  ELCQERMNSLETMCNYLTASLGSIQNESNSKNLPDFKAELSIYSNALARLKDRFN 949


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,326
Number of Sequences: 27780
Number of extensions: 304620
Number of successful extensions: 778
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)