Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0805
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 235 HSYCDVRGEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTDDANKAAKLTV 390
           H YC VR         ++ R++LP + +   +YI        +  +AAK  +
Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCII 479


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 451 NNYAIAYNCKYDDKKKSHQVFVWILSRNKKL 543
           + + + Y      K KS  + VW LSR ++L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -1

Query: 249 VAIRMPPVIPINH-----YLGVLKTN 187
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -1

Query: 249 VAIRMPPVIPINH-----YLGVLKTN 187
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -1

Query: 249 VAIRMPPVIPINH-----YLGVLKTN 187
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 451 NNYAIAYNCKYDDKKKSHQVFVWILSRNKKL 543
           + + + Y      K KS  + VW LSR ++L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 272  RRKTNISESICQRCFHQ 322
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 660 ELVNLQASSEKSVCTSFEESISLECSLDEI 571
           +L   +   + +VC  FEE    + SLD++
Sbjct: 104 DLFECENKEKSNVCLKFEEQKRRKKSLDDV 133


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 635 LKNRYAQVSKSLSLWSAPLMKL 570
           L  RY  + K  +LW+ P++ +
Sbjct: 86  LNQRYGALCKEEALWNFPMISV 107


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 304 PKVFSSIKKYIEGTAKLT 357
           PK+ S  + Y+EG  ++T
Sbjct: 643 PKILSVFEPYLEGKQQMT 660


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,697
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)