Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0805
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    29   4.1  
At4g10890.1 68417.m01772 expressed protein                             29   4.1  
At3g28980.1 68416.m03622 expressed protein                             29   4.1  
At5g06980.1 68418.m00790 expressed protein                             28   5.4  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   9.4  
At1g12710.1 68414.m01474 F-box family protein / SKP1 interacting...    27   9.4  

>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 331 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIA 468
           Y   +  ++    KA      F  G  ++DG   IL  DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 275 RKTNISESICQRCFHQSRSI*KGRPSSPTMPIKPQS*QSLLSLEKYLAMDQCRSW 439
           ++T I   +C RC+H S    K R S  T  +K  S  ++L  E+   M + + W
Sbjct: 194 KQTKICSRVCSRCYHYSMRQ-KLRHSLHTRILKSNSENAILFSEEEEEMAEKQRW 247


>At3g28980.1 68416.m03622 expressed protein 
          Length = 445

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +1

Query: 232 GHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTDDANKAAKLTVTFKFGEI 411
           G S    +GE   S++ E +     +  +S K   E ++  T +A++++ LTVT    E 
Sbjct: 226 GESETSAKGESKTSAKGESETSAKGESETSAKGESETSSSKTAEASQSSSLTVTQVEEET 285

Query: 412 SRDGSVQIL 438
           S+D S  I+
Sbjct: 286 SKDVSTFIM 294


>At5g06980.1 68418.m00790 expressed protein
          Length = 275

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 484 DDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKGALQRDRLFETCAYRFFRGSLQIYQ 657
           DD +K  +   + L++N + + D+ +  D F++    R+  FET   R  RG   I Q
Sbjct: 193 DDTRKCFRDTFYRLAKNSQQKSDSNS--DEFLEDRTSRETEFETKLNRQSRGQSHIQQ 248


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 312 HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 178
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At1g12710.1 68414.m01474 F-box family protein / SKP1 interacting
           partner 3-related contains Pfam profile PF00646: F-box
           domain
          Length = 291

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 238 SYCDVRGEILGSSQDEHQRKHLPKVFSSIKKYIEGTAKLTDD 363
           +Y DV  +ILG   +  Q++HL    S I  + + T K+  D
Sbjct: 75  NYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWID 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,189
Number of Sequences: 28952
Number of extensions: 280925
Number of successful extensions: 741
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)