Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0804
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.82 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   2.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.3  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 191 TRPLRWAFKINIIRSHLHKDSHH 123
           T+PL  A  +N++RS+  + SHH
Sbjct: 777 TKPLVDAQTMNLLRSYHQQQSHH 799


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 465 HSQKPPSFYYYYED 506
           H + PP F YY+E+
Sbjct: 17  HQEVPPPFGYYHEE 30


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 483 SFYYYYEDIILKCI 524
           ++Y+YY  IIL C+
Sbjct: 100 TYYFYYAFIILLCV 113


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 246 CKYIYLYKVSHN*CSVSDTTIVN 314
           C +IYL+ V +   SV + +I+N
Sbjct: 148 CYFIYLFTVYYIYYSVHEASIIN 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,978
Number of Sequences: 336
Number of extensions: 3847
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)