Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0804
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   2.2  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +1

Query: 529  LFLATLST-INLFNIVTMRLNYESDY*F--SKKTGTYRYITFILAAEKKPISL 678
            L+++ L+T INL+   +   N E+D     SKK G+ +Y ++ L AE  P+S+
Sbjct: 3279 LYISNLTTPINLYIPRSPPENLETDENMFVSKKNGSMKYHSYFLRAEDLPVSM 3331


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 513  ILYPHNNNKMTVVSENGLHPTXLSVESKCLCTYTINIIKLDKGL 382
            + +  NNNK TV   +G+  T   ++ +   +Y + I   DKG+
Sbjct: 1416 VAFTVNNNKFTVNDTSGVLYTTHVLDRETKASYQLTITATDKGI 1459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,572,627
Number of Sequences: 59808
Number of extensions: 397255
Number of successful extensions: 737
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)