Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0804
         (721 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U90919-1|AAB51059.1|  478|Homo sapiens zinc finger protein protein.    31   5.5  
BC050683-1|AAH50683.1|  431|Homo sapiens ZNF410 protein protein.       31   5.5  
AK223261-1|BAD96981.1|  478|Homo sapiens clones 23667 and 23775 ...    31   5.5  

>U90919-1|AAB51059.1|  478|Homo sapiens zinc finger protein protein.
          Length = 478

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 138 VKVRSNNVNFKCPAKRPGTAIYNIVRMTYNFHTHNNCKYIYLYKVSHN*CSVSDTTIVNV 317
           +K   N+ +F CPA+  G + Y + R+  +  THN  K    ++     C    TT  N+
Sbjct: 240 LKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCHESG---CGKQFTTAGNL 296

Query: 318 IN 323
            N
Sbjct: 297 KN 298


>BC050683-1|AAH50683.1|  431|Homo sapiens ZNF410 protein protein.
          Length = 431

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 138 VKVRSNNVNFKCPAKRPGTAIYNIVRMTYNFHTHNNCKYIYLYKVSHN*CSVSDTTIVNV 317
           +K   N+ +F CPA+  G + Y + R+  +  THN  K    ++     C    TT  N+
Sbjct: 240 LKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCHESG---CGKQFTTAGNL 296

Query: 318 IN 323
            N
Sbjct: 297 KN 298


>AK223261-1|BAD96981.1|  478|Homo sapiens clones 23667 and 23775
           zinc finger protein variant protein.
          Length = 478

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 138 VKVRSNNVNFKCPAKRPGTAIYNIVRMTYNFHTHNNCKYIYLYKVSHN*CSVSDTTIVNV 317
           +K   N+ +F CPA+  G + Y + R+  +  THN  K    ++     C    TT  N+
Sbjct: 240 LKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCHESG---CGKQFTTAGNL 296

Query: 318 IN 323
            N
Sbjct: 297 KN 298


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,698,837
Number of Sequences: 237096
Number of extensions: 1934748
Number of successful extensions: 1879
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)