Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0804
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    31   1.1  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    31   1.1  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    29   2.5  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     29   2.5  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    29   2.5  

>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 72  ASIYMSVGLPTPVSGALMMRIFVKVRSNNVNFKCPAKRPGTAIYNIVRM 218
           + +Y+S  LP+P  GALM        +N++N   P  +P    +++  M
Sbjct: 166 SQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPLHQPRAFSFSLSGM 214


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 72  ASIYMSVGLPTPVSGALMMRIFVKVRSNNVNFKCPAKRPGTAIYNIVRM 218
           + +Y+S  LP+P  GALM        +N++N   P  +P    +++  M
Sbjct: 166 SQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPLHQPRAFSFSLSGM 214


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 72  ASIYMSVGLPTPVSGALMMRIFVKVRSNNVNFKCPAKRPGTAIYNIVRM 218
           + +Y+S  LP+P  GALM        +N++N   P  +P    +++  M
Sbjct: 166 SQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPLHQPRAFSFSLSGM 214


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 72  ASIYMSVGLPTPVSGALMMRIFVKVRSNNVNFKCPAKRPGTAIYNIVRM 218
           + +Y+S  LP+P  GALM        +N++N   P  +P    +++  M
Sbjct: 166 SQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPLHQPRAFSFSLSGM 214


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 147 RSNNVNFKCPAKRPGTAIYNIVRMTYNFHTHNNCKYIYL-YKVSHN*CSVSDTTIVNVIN 323
           RS  V   C + R     +N+  +T++ H H   K  ++  K++   CS +D    +V++
Sbjct: 141 RSEYVKIPCDSNRTIAEFFNVKVLTHD-HIHEYKKQFFVGEKMNWTVCSAADL---SVVS 196

Query: 324 PLKAKW 341
           P+K  W
Sbjct: 197 PVKEFW 202


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 147 RSNNVNFKCPAKRPGTAIYNIVRMTYNFHTHNNCKYIYL-YKVSHN*CSVSDTTIVNVIN 323
           RS  V   C + R     +N+  +T++ H H   K  ++  K++   CS +D    +V++
Sbjct: 141 RSEYVKIPCDSNRTIAEFFNVKVLTHD-HIHEYKKQFFVGEKMNWTVCSAADL---SVVS 196

Query: 324 PLKAKW 341
           P+K  W
Sbjct: 197 PVKEFW 202


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 147 RSNNVNFKCPAKRPGTAIYNIVRMTYNFHTHNNCKYIYL-YKVSHN*CSVSDTTIVNVIN 323
           RS  V   C + R     +N+  +T++ H H   K  ++  K++   CS +D    +V++
Sbjct: 141 RSEYVKIPCDSNRTIAEFFNVKVLTHD-HIHEYKKQFFVGEKMNWTVCSAADL---SVVS 196

Query: 324 PLKAKW 341
           P+K  W
Sbjct: 197 PVKEFW 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,576,315
Number of Sequences: 27780
Number of extensions: 313464
Number of successful extensions: 596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)