Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0804
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   5.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 417 YTINIIKLDKGLRSSHIQQSI 355
           Y+++++ LDK L  +HI   +
Sbjct: 304 YSVSVVSLDKSLEVNHISARV 324


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 70  YPLSTCIFYMDTKI 29
           YPL+ C++Y  T I
Sbjct: 298 YPLTGCLYYFSTTI 311


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 222 YNFHTHNNCKYIYLYKVSH 278
           Y ++ +NNCK +Y Y +++
Sbjct: 96  YKYNYNNNCKKLY-YNINY 113


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 206 IINSCTRPLRWAFKINIIRSHLHKD 132
           +++SCTRP R     +  R ++H D
Sbjct: 12  LLSSCTRPSRGNAVPSSQRGNVHND 36


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 206 IINSCTRPLRWAFKINIIRSHLHKD 132
           +++SCTRP R     +  R ++H D
Sbjct: 12  LLSSCTRPSRGNAVPSSQRGNVHND 36


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 222 YNFHTHNNCKYIY 260
           YN + +NNCK +Y
Sbjct: 343 YNNNYNNNCKKLY 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,922
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)