Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0803
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 33 0.042
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 32 0.074
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.23
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ... 29 0.91
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 28 1.2
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb... 28 1.2
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.6
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 2.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 2.8
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 3.7
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 27 3.7
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 4.9
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 26 4.9
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 25 8.5
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 8.5
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 33.1 bits (72), Expect = 0.042
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +1
Query: 73 KKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQEL 252
K+ +NE + S EKL +++ +E E+++ +K +S+QEL
Sbjct: 562 KEAAVATNNELSESKNSLQTLCNAFQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQEL 621
Query: 253 RKREW--DKFIDDMNFKCQ--RIDNA-FEEKEEELRDLYADLKHKL 375
K + D + K Q +++ A FE+KE L D DL+ KL
Sbjct: 622 ENNHQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKL 667
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.3 bits (70), Expect = 0.074
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 85 EIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKRE 264
E K + ER +K EK+ + L EE EK LE +K +K K +E R+RE
Sbjct: 663 EEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRE 722
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/91 (18%), Positives = 45/91 (49%)
Frame = +1
Query: 73 KKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQEL 252
+++ +I++ E +R +K + +A L E+ + LE ++ + + K ++
Sbjct: 586 RELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQR 645
Query: 253 RKREWDKFIDDMNFKCQRIDNAFEEKEEELR 345
KRE +K ++ + + +E+E++L+
Sbjct: 646 LKREQEKKQQELERQKREEKQKQKEREKKLK 676
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.7 bits (66), Expect = 0.23
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Frame = +1
Query: 148 SEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMNFKCQRIDNAFEE 327
S+KL + E +D + + + S+ E + + + + + +C +F+E
Sbjct: 532 SQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECV----SFQE 587
Query: 328 KEEELRDLYADLKHKLNIADI*IMDLKGSLVDTNVR---IYPTNGF-LEYIK 471
K EL +LK KLN A+ +L S ++NV+ + P NG LE +K
Sbjct: 588 KINELNSQIDELKLKLNEANKKYQELAISFENSNVKTQSVEPDNGLSLEALK 639
>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 28.7 bits (61), Expect = 0.91
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 133 ALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMN 291
+LPVL ++LEQ+ E LEK + +K QEL+ + KF D +N
Sbjct: 72 SLPVLLDQLEQSE---ESLEKQVDVLRSSMEKDETRIQELKSMLYSKFHDQIN 121
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 523 SDYETKCNVKDFDYFAKTVNLTNEDIELLR 612
SDYE +C V+D + T+ +T D +L+
Sbjct: 406 SDYEKECKVQDIGLYEDTILITLSDGRILK 435
>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 629 YQEILLGKVNKTEIEPEFVEHDKIKTNKTKT 721
++E L + K +I+ VEHDK++ +TK+
Sbjct: 8 HEENELPSIEKRKIDENAVEHDKVERKRTKS 38
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 139 PVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKRE 264
P L + +++ L L ++ + YLE KV ++ ++SN++ K++
Sbjct: 569 PNLFQHVDEKLRLEKKEQLSYLEILKVIEQMLESNEQKFKKQ 610
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = +1
Query: 76 KITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELR 255
K E+ ++ S + N+ +K + + D QKV +K + E
Sbjct: 106 KTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQA 165
Query: 256 KREWDKFIDDMNFKCQ-RIDN--AFEEKEEELRDLYADLKHKL 375
++ W K+I + + + + RI N + E++E L A + K+
Sbjct: 166 QQNWSKYIKEQDIQDELRIANKDGYVERQEFLAKTRAAHEEKI 208
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.8
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Frame = +1
Query: 79 ITEIKDNESERIRKSGHNALPVLSEKLEQALN--LCEEL-EKDYLETQKVCQKQIKSNQE 249
++E ++++SE + + + E L +LN L +E E+D LET++ +Q +N E
Sbjct: 3969 VSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNE 4028
Query: 250 ---LRKREWDKFIDDMNFKCQRIDNAFEEKEEELRD 348
+ K + +K ++D D +E EEE+ D
Sbjct: 4029 SDLVSKEDDNKALEDK-------DRQEKEDEEEMSD 4057
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 499 NILKLKNGSDYETKCNVKDFDYFAKTVNLTNEDIE 603
N +K N + T+C+V+ DY TV L E I+
Sbjct: 1120 NAIKFTNVGEVFTRCSVEKIDYSTNTVVLKWECID 1154
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 26.6 bits (56), Expect = 3.7
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +1
Query: 100 ESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQ-ELRKREWDKF 276
++E I+K+ L E LE+ L ++L ++ T+K+ Q +K+ E R + ++
Sbjct: 72 DNEDIQKTEAEQLSRKVELLEEELETNDKLLRE--TTEKMRQTDVKAEHFERRVQSLERE 129
Query: 277 IDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLN 378
DDM E+K EE+ D Y +K +L+
Sbjct: 130 RDDM-----------EQKLEEMTDKYTKVKAELD 152
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 118 KSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKS 240
KS +LP L E+ E+ +LEK++ E+ + ++ + S
Sbjct: 499 KSQQKSLPYLEEQYEKYRAKAADLEKEFSESTTLLKRDLSS 539
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 265 ILFFSILGYFLFASGKPFVFQDNLFPILHINSR 167
++F ++ Y L ASG+ ++F I H+N+R
Sbjct: 1258 LIFAGVIYYLLAASGQNYIFISMTNFISHLNNR 1290
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 4.9
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 RIRKSGHNA-LPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDD 285
R+RKS EKL + + EEL + + ++ QK++ E+ R WDK I+
Sbjct: 45 RLRKSSDQTEKKCWKEKLMKIRSELEELWEQSMMYEE--QKELTQLGEMLDRLWDKHINS 102
Query: 286 MNFKCQRI-DNAFEEKEEEL 342
K + I D A ++ +
Sbjct: 103 EGSKSETISDTAISGNDDTM 122
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 85 EIKDNESERIRKSGHNALPVLSEKLEQA 168
E + ES+RIR+ + +PV+ EK++++
Sbjct: 12 EKRKTESQRIREKYPDRIPVICEKVDKS 39
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 154 KLEQALNLCEE-LEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMNFKCQR 306
+LE L E+ L E + V ++ +E+ +RE +K + DM+ + QR
Sbjct: 310 QLENDLQFREQRLSARESELENVIASRLAQREEILRRELEKQLRDMDARYQR 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,601
Number of Sequences: 5004
Number of extensions: 51557
Number of successful extensions: 221
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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