Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0802
(662 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine hydroxy... 24 1.3
AM292343-1|CAL23155.2| 301|Tribolium castaneum gustatory recept... 23 2.2
X72339-1|CAA51066.1| 133|Tribolium castaneum abdominal protein. 22 5.2
AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosin... 22 5.2
AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A prot... 22 5.2
AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII pr... 22 5.2
U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein. 21 9.0
U81038-1|AAB39355.1| 412|Tribolium castaneum transcription fact... 21 9.0
AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicas... 21 9.0
AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. 21 9.0
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 21 9.0
>EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine
hydroxylase protein.
Length = 532
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 59 T*YETDENECLNQLKQHSTVVAD 127
T Y T E +C+++L H ++AD
Sbjct: 349 TPYHTPEPDCIHELLGHMPLLAD 371
Score = 21.8 bits (44), Expect = 5.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 77 RPFRIRFTAHT 45
RPF +RF HT
Sbjct: 483 RPFEVRFNPHT 493
>AM292343-1|CAL23155.2| 301|Tribolium castaneum gustatory receptor
candidate 22 protein.
Length = 301
Score = 23.0 bits (47), Expect = 2.2
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -2
Query: 349 TRNNF*YFTPKKHTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFHTSSREY*AWICSS 170
T NF HT F +F+ I+L + + + V LF+ S R + +C+
Sbjct: 162 TSMNFVLLIGDLHTSIYIIFFDMFYQHHKIVLDMGKNCVTYVFDLFYLSKRA--SDLCNE 219
Query: 169 ICRL-IFFHGLKI 134
+ I GLKI
Sbjct: 220 ANKTKILLVGLKI 232
>X72339-1|CAA51066.1| 133|Tribolium castaneum abdominal protein.
Length = 133
Score = 21.8 bits (44), Expect = 5.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -1
Query: 320 QKAHSAYPKFQPLVLQWSFHYPFHI 246
++ Y +FQ L L+ FH+ ++
Sbjct: 7 RRGRQTYTRFQTLELEKEFHFNHYL 31
>AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosine
kinase Torso-likeprotein protein.
Length = 803
Score = 21.8 bits (44), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 278 EQVAETLDMLSV--LFGCEILKIIPGRVS 358
E VA+ L + +V EI K+IPGR++
Sbjct: 753 ENVAQYLQIENVEQTLNHEIKKVIPGRIT 781
>AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A
protein.
Length = 284
Score = 21.8 bits (44), Expect = 5.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -1
Query: 320 QKAHSAYPKFQPLVLQWSFHYPFHI 246
++ Y +FQ L L+ FH+ ++
Sbjct: 158 RRGRQTYTRFQTLELEKEFHFNHYL 182
>AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII
protein.
Length = 343
Score = 21.8 bits (44), Expect = 5.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -1
Query: 320 QKAHSAYPKFQPLVLQWSFHYPFHI 246
++ Y +FQ L L+ FH+ ++
Sbjct: 217 RRGRQTYTRFQTLELEKEFHFNHYL 241
>U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein.
Length = 283
Score = 21.0 bits (42), Expect = 9.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 320 QKAHSAYPKFQPLVLQWSFHY 258
++ +AY + Q L L+ FHY
Sbjct: 234 KRQRTAYTRHQILELEKEFHY 254
>U81038-1|AAB39355.1| 412|Tribolium castaneum transcription factor
Deformed protein.
Length = 412
Score = 21.0 bits (42), Expect = 9.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 320 QKAHSAYPKFQPLVLQWSFHY 258
++ +AY + Q L L+ FHY
Sbjct: 234 KRQRTAYTRHQILELEKEFHY 254
>AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicase
protein.
Length = 580
Score = 21.0 bits (42), Expect = 9.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 311 VLFGCEILKIIPGRV 355
+L GC IL PGR+
Sbjct: 282 ILGGCHILVATPGRL 296
>AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein.
Length = 412
Score = 21.0 bits (42), Expect = 9.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 320 QKAHSAYPKFQPLVLQWSFHY 258
++ +AY + Q L L+ FHY
Sbjct: 234 KRQRTAYTRHQILELEKEFHY 254
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 21.0 bits (42), Expect = 9.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 149 SWPQNLQYLP 120
S P NLQYLP
Sbjct: 166 SCPMNLQYLP 175
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,177
Number of Sequences: 336
Number of extensions: 3934
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -