Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0802
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 227 1e-60
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 1.0
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 1.8
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 2.4
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 3.2
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 26 4.2
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 4.2
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 5.6
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 5.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 5.6
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 26 5.6
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 7.4
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 7.4
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 9.7
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 227 bits (555), Expect = 1e-60
Identities = 115/192 (59%), Positives = 140/192 (72%), Gaps = 1/192 (0%)
Frame = +2
Query: 89 LNQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNG 265
L QLK TVV +DTGDFE++ +YKP DATTNPSLIL+A+ QY ++D A+ Y K G
Sbjct: 4 LEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAKAKG 63
Query: 266 SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAEHG 445
SI Q+ D L + FG +IL I+PGRVS EVDAR SFD +I KA I L+ G
Sbjct: 64 GSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYEAEG 123
Query: 446 IKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRI 625
I +ER+LIK+AST+EGIQAAK+LE++ GIHCNLTLLFS QA+ACAEANVTLISPFVGRI
Sbjct: 124 IGRERVLIKIASTYEGIQAAKQLEEE-GIHCNLTLLFSFVQAVACAEANVTLISPFVGRI 182
Query: 626 LDWYVEHTKKTY 661
LD+Y + Y
Sbjct: 183 LDFYKAKNNRDY 194
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -3
Query: 447 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSME 268
+P S NK+ + F + +N S+ ++ I N S P +S + +SAT S+E
Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207
Query: 267 LPL 259
+P+
Sbjct: 208 IPI 210
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 414 LNLSIYLLNMVLKKKEF*LNWPPLGKEFKQPKSWRRSMESIV 539
L+ SI + + ++ +F L+ P+ ++FK +S+RR ++S++
Sbjct: 362 LDTSISQIRVTHEQAKFLLSVIPVNQDFKALQSYRRILDSVI 403
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 456 SFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLS 304
S LIP +K +A +SL ++NLA+ + T IF+++ PK S
Sbjct: 159 SILIPTFVSKFNEFLALD--SSLRDNNLATVAVITTDKAIFSLNVPKKKRS 207
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +2
Query: 80 NECLNQLKQHS----TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIK 247
N C++ +Q+ T +AD + + + D T L+L + G+E Y D A
Sbjct: 258 NVCISCYQQNRFPSPTTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKV 315
Query: 248 YGKDNGSSIEEQVAETLDMLS 310
N S+EE + + L++ S
Sbjct: 316 ASHVNTKSVEECILKFLNLPS 336
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 524 HGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEH 646
H + NL +LY C AN+ + +PF +++EH
Sbjct: 110 HELSHNLGFKKTLYNRAYCLFANLPVGAPFAASFRPYHMEH 150
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 428 LFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNL 544
L +G K I++ + T + IQ L +KH IHC+L
Sbjct: 788 LIKSNGFKGLPIVVIKSITRQLIQCLTLLNEKHVIHCDL 826
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -2
Query: 328 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 239
FTPK + ++++ FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 416 KFINLFAEHGIKKERI-LIKLASTWEGIQAA 505
+ ++LF+ HG++KE + L+ AS + IQ A
Sbjct: 216 RILSLFSFHGVRKESLELLWRASKYPNIQGA 246
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 522 FFSNSLAA*IPSQVEANLIKILSFLIPCSANKLI 421
FF+ SLA IP V + + + LIP A K++
Sbjct: 885 FFAQSLATPIPEPVPVDNMPTFTVLIPHYAEKIL 918
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 527 GIHCNLTLLFSLYQAIACAEANVTLISPFVGRILD 631
GI C L FSL A+ +EA+V F+ IL+
Sbjct: 152 GIKCESILCFSLLTALLDSEADVIEFGDFLISILE 186
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 449 KKERILIKLASTWEGIQAAKEL 514
+K+ I + + WEG+Q AKEL
Sbjct: 299 EKKTITLHNGNQWEGLQMAKEL 320
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 342 IIFNISHPKSTLSISKVSATCSSMELPLSF 253
II N+ KS L+ KV A CS + LSF
Sbjct: 596 IIQNVEKLKSYLNSFKVQAECSEISKILSF 625
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -2
Query: 604 Y*CNICFSTGNSLVQR--EQQCKIT 536
Y CN F+ NSLV R +Q C +T
Sbjct: 500 YFCNDIFAPSNSLVDRTLDQTCTVT 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,576
Number of Sequences: 5004
Number of extensions: 64152
Number of successful extensions: 209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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