Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0802
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...   127   7e-30
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040...    38   0.009
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    31   0.82 
08_02_0841 - 21749599-21749978,21750409-21753367                       29   2.5  
06_03_0743 + 24069752-24070483,24071890-24072345                       29   3.3  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score =  127 bits (307), Expect = 7e-30
 Identities = 65/190 (34%), Positives = 115/190 (60%), Gaps = 3/190 (1%)
 Frame = +2

Query: 89  LNQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGME--QYQHILDKAIKYGKDN 262
           L+ +   S +V DT  F+  +++ PT AT + SL+L  AG+   +++  +D A+  G+ N
Sbjct: 66  LDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADGECN 125

Query: 263 G-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 439
                E++++  L       G E+  ++PGRVS E+DARL++D    I +  + + L+++
Sbjct: 126 TMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKLYSD 185

Query: 440 HGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVG 619
           H +  ER+L K+ +TW+GI+A++ LE + GI  +LT ++S  QA A A+A  +++  FVG
Sbjct: 186 HDVLSERLLFKIPATWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGASVVQIFVG 244

Query: 620 RILDWYVEHT 649
           R+ DW   H+
Sbjct: 245 RVRDWARTHS 254


>01_07_0031 -
           40603243-40603491,40603617-40603799,40603896-40604084,
           40604244-40604916,40605583-40605737
          Length = 482

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
 Frame = +2

Query: 218 YQHILDKAIKYGKDNGSSIEEQVAETLDMLSVLFG--CEILKIIPGRVSVEVDARLSFDK 391
           Y     + I  GKD  S+  E V + +     LF    +      G VSVEV  RL+ D 
Sbjct: 171 YDDQFKQLILAGKDAESAYWELVIKDIQDACKLFEPIYDQTDGADGYVSVEVSPRLANDT 230

Query: 392 DASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSL--Y 565
             ++ +A K+++   +    +  + IK+ +T E + + KE+   +GI  N+TL+FS+  Y
Sbjct: 231 QGTV-EAAKWLHKVVD----RPNVYIKIPATAECVPSIKEVIA-NGISVNVTLIFSIARY 284

Query: 566 QAI 574
           +A+
Sbjct: 285 EAV 287


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 432  NKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHP 319
            N +++++AF  +A  S+ N+ STS     G + +I+ P
Sbjct: 897  NSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASP 934


>08_02_0841 - 21749599-21749978,21750409-21753367
          Length = 1112

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
 Frame = -2

Query: 277 FNGASIILSIFNSFIKNVLILFHTSSREY*AWI--CSSICRLIFFHGLKISSICHNSGML 104
           F G  I  S  +  ++  ++ F+  S E  +W+  CSS+ +L F +      I  + G+L
Sbjct: 246 FTG-EITFSFEDCKLEVFILSFNQISNEIPSWLGNCSSLTQLAFVNNNISGQIPSSLGLL 304

Query: 103 FKLIKALIFVRFVSG--SPLILTNEILHWLKI 14
             L + L+    +SG   P I   ++L WL++
Sbjct: 305 RNLSQLLLSENSLSGPIPPEIGNCQLLVWLEL 336


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 424 QFIC*TWY*KRKNFN*IGLHLGRNSSSQRVGEEAWNPL*SYTVVLFVPSYCLC*SKCYTN 603
           QF C   Y     +N + +H+  + S  R G E+       T +L +P YC C + C  N
Sbjct: 227 QFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGT-QPTAMLRLPCYC-CAAGCRNN 284

Query: 604 I 606
           I
Sbjct: 285 I 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,879,502
Number of Sequences: 37544
Number of extensions: 360881
Number of successful extensions: 908
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)