Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0802
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)               148   3e-36
SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)                       30   1.5  
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)                    30   1.9  
SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)                  30   1.9  
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 29   2.6  
SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)                   29   4.5  
SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)                 28   7.8  

>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
          Length = 224

 Score =  148 bits (359), Expect = 3e-36
 Identities = 70/96 (72%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
 Frame = +2

Query: 377 LSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLF 556
           LSFD +AS+AKA+KFI L+ E GI KER+LIKL+STWEGIQAA+ LE+ HGIHCNLTLLF
Sbjct: 2   LSFDVEASVAKALKFIELYKEAGISKERVLIKLSSTWEGIQAARILERDHGIHCNLTLLF 61

Query: 557 SLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTY 661
           +  QA+ACAEA VTLISPFVGRI DWYV  T +K Y
Sbjct: 62  AFVQAVACAEAGVTLISPFVGRIYDWYVAKTGQKEY 97


>SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)
          Length = 111

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +2

Query: 320 GCEILKIIPGRVSVEVDARLSFDKDASIA 406
           GCE+L+  PG  SV VDA + FDK A+++
Sbjct: 50  GCEVLRFRPG--SVVVDAIVYFDKVANVS 76


>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
          Length = 521

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 498 KQPKSWRRSMESIVILHCCSLCTKLLPVL 584
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 199 KPIEEWRLSWEVIIIDECCKVQTKVLRVI 227


>SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)
          Length = 396

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 498 KQPKSWRRSMESIVILHCCSLCTKLLPVL 584
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 60  KPIEEWRLSWEVIIIDECCKVQTKVLRVI 88


>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +2

Query: 365 VDARLSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNL 544
           +D  +  D   +I K    + L     +  + +LIKLA T E     +ELE K  I C+L
Sbjct: 597 IDGDVMCDVLDAINKNTSLMRLSLYTPVTSDELLIKLAETIEQRTLIEELELK--ISCSL 654

Query: 545 TLLFSLYQAIACAEAN-VTLISPFVGR 622
           T     Y A A +  N +  + P++ +
Sbjct: 655 THNAWSYFARALSTNNSIKALQPYINK 681


>SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)
          Length = 519

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +2

Query: 77  ENECL-NQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYG 253
           +NE + NQ K+  T++ +  +   +  +KPTDA T  S +LS  G    + ++   +   
Sbjct: 310 QNETIDNQYKRRVTLLEN--NTMVILPFKPTDAVTFTSKLLSHDGKSIQESLVTVKVDKP 367

Query: 254 KDNGSSI 274
           KD  S++
Sbjct: 368 KDGASTM 374


>SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 489 SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDN 376
           + V ANLI  + F +  S  +LINL  + ++A  S +N
Sbjct: 228 NNVAANLISSMRFYVMDSIGRLINLNGYRIVADNSGEN 265


>SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)
          Length = 366

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 393 SLSNDN-LASTSTDTRPGIIFNISHPKSTLSISKVSATCSSMELPLSFPY 247
           ++S DN +  ++T   PG ++N +      + ++V A  +S E P S PY
Sbjct: 188 NMSFDNEVWLSNTSVSPGRMYNFTIDLPGKTCTRVQADTASCEFPFSHPY 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,261,288
Number of Sequences: 59808
Number of extensions: 434579
Number of successful extensions: 1085
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)