Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0802
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   253   1e-67
AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...    62   5e-10
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    31   0.55 
U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z93396-7|CAL49449.1|  196|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical pr...    27   9.0  
L25598-7|AAA27938.3|  436|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  253 bits (619), Expect = 1e-67
 Identities = 122/192 (63%), Positives = 153/192 (79%), Gaps = 1/192 (0%)
 Frame = +2

Query: 89  LNQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGS 268
           L QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++D+++ Y K++ S
Sbjct: 4   LEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKEHAS 63

Query: 269 SIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAEHGI 448
             +E +   +D L V+FG EILK IPGRVS EVDARLSFD  ASI +A+  I  + + GI
Sbjct: 64  GHQEVLQAAMDRLFVVFGKEILKTIPGRVSTEVDARLSFDTQASIDRALGLIAQYEKEGI 123

Query: 449 KKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRIL 628
            K+RILIKLASTWEGI+AAK LE KHGIHCN+TLLF+  QA+ACAE+ VTLISPFVGRI+
Sbjct: 124 SKDRILIKLASTWEGIRAAKFLESKHGIHCNMTLLFNFEQAVACAESGVTLISPFVGRIM 183

Query: 629 DWYVEHT-KKTY 661
           DW+V++T +K Y
Sbjct: 184 DWFVKNTDQKAY 195


>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 27/41 (65%), Positives = 36/41 (87%), Gaps = 1/41 (2%)
 Frame = +2

Query: 542 LTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTY 661
           +TLLF+  QA+ACAE+ VTLISPFVGRI+DW+V++T +K Y
Sbjct: 1   MTLLFNFEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAY 41


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +2

Query: 257 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSV-EVDARLSFDKDASIAKAIKFINLF 433
           D  S++ E++ E    ++++      +    +V + E  A+L+ +KD  I K  + I L 
Sbjct: 218 DPSSTMNEELTELRSQMNLIIEYNEKQETVWQVKLSEASAQLN-EKDLVIEKITRKIELL 276

Query: 434 AEHGIKKERILIKLASTWEGIQAAKELEK 520
            E+ +KK++ + +L   +E     K L+K
Sbjct: 277 QENNVKKDQRIYELEQCFESEDYCKILQK 305


>U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical
           protein T25G12.5 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +2

Query: 140 EAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDN---GSSIEEQVAETLDMLS 310
           E  K    T   T P++   A G+      LD A +Y  +    G+ I      +  +  
Sbjct: 255 EGFKVAMKTFDKTRPTVAALATGVAY--RCLDVATQYSLERKAFGTQIANHQGVSFLLAE 312

Query: 311 VLFGCEILKIIPGRVSVEVDARLSFDKDASIAK 409
           +   CE+ +++  +   EVDA       ASIAK
Sbjct: 313 MAINCELARLMTYKSGAEVDAGRPGSYYASIAK 345


>AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical
           protein F56C3.8 protein.
          Length = 69

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 453 FLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNI 328
           F++    N ++ LI      SL +D L   +TD +PG++  +
Sbjct: 5   FIVTKMKNTVLLLILALFFISLRDDGLQMPNTDLKPGLLMQM 46


>Z93396-7|CAL49449.1|  196|Caenorhabditis elegans Hypothetical
           protein ZC15.10 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 519 RSMESIVILHCCSLCTKLLPVLKQMLH*YHHLLV 620
           +  +  ++L   S CTKL+P +  + H   H  V
Sbjct: 3   QKQDQTIVLKATSSCTKLVPFIHSVAHSVQHFFV 36


>Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical
           protein T09E11.6 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 316 KHTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFH 209
           +H Q + SF+HL FN   +I S  NS ++    L H
Sbjct: 413 EHFQAVASFTHLMFN--KVIPSFDNSIVECTAELLH 446


>Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical
           protein T12A7.1 protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 161 PTDATTNPSLILSAAG-MEQYQHILDKAIKYGKDNGSSIEEQVA-ETLDMLSVLFGCEIL 334
           P D     S ++   G M  Y+H L     YG  N S I  +VA +   M+      +IL
Sbjct: 401 PLDLNRQSSSVVGINGVMNAYRHALQNVTLYGPTNFSPIIVEVANKAQKMMKTTARYQIL 460

Query: 335 KIIPGRVSVEVDARLSFDKDAS 400
            II   +  ++ A ++   +AS
Sbjct: 461 LIITDGIISDMYATINTVINAS 482


>L25598-7|AAA27938.3|  436|Caenorhabditis elegans Hypothetical
           protein C06G4.5 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 461 ILIKLASTWEGIQAAKELEK-KHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWY 637
           I++    T  G+    ++EK    I   +   F++YQ I C    + LI+ F  ++L   
Sbjct: 200 IILYAKETAPGMLTRMKIEKCTVDIDSQMFTAFTIYQFILCYCTPLVLIAFFYTKLLSKL 259

Query: 638 VEHTK 652
            EHT+
Sbjct: 260 REHTR 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,080
Number of Sequences: 27780
Number of extensions: 340844
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)