Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0802
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.0  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    21   7.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.9  

>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 320 QKAHSAYPKFQPLVLQWSFHYPFHI 246
           ++    Y +FQ L L+  FHY  ++
Sbjct: 9   RRGRQTYTRFQTLELEKEFHYNHYL 33


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 65  YETDENECLNQLKQHSTVVAD 127
           Y T E +C+++L  H  ++AD
Sbjct: 329 YHTPEPDCIHELLGHMPLLAD 349


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 207 VWNSISTFLIKLLNMERIMEAPLKNKWL 290
           +W+  ST++ K+ N +   +  L+N WL
Sbjct: 318 IWDYDSTYIPKVKNKKAGSKHLLQNTWL 345


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 283 LFFNGASIILSIFNSFIKNVLILFHTS 203
           LF N AS+ + IFN  I  +L++ H S
Sbjct: 268 LFLNMASVFMRIFN-LICMMLLIGHWS 293


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 339 IFNISHPKSTLSISKVSATCSSMELPLS 256
           ++ ISHPK  L + K        E P+S
Sbjct: 327 VYAISHPKYRLELQKRLPWLELQEKPIS 354


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 343 NNF*YFTPKKHTQHIQSFSHLFFNGASIILSI-FNSFI 233
           +NF   TP++  Q I   S + F  A II +I + SFI
Sbjct: 430 HNFTTMTPQEIAQWIDRRSRIVFPVAFIIFNILYWSFI 467


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 342 IIFNISHPKSTLSISKVSATCSS 274
           I+FNI H  S     K   TC S
Sbjct: 33  ILFNILHMSSAEGWFKAIGTCGS 55


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +3

Query: 192 YSLLLVWNSISTFLIKLLNMERIMEAP 272
           Y + L +NS+  F    + +++++E+P
Sbjct: 21  YFIFLYFNSLVRFRRFTIELDKVLESP 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,105
Number of Sequences: 438
Number of extensions: 4092
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)