Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0802
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...   126   1e-29
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    31   0.68 
At3g25130.1 68416.m03138 expressed protein                             29   2.1  
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ...    29   2.1  
At4g35410.1 68417.m05029 clathrin adaptor complex small chain fa...    29   3.6  
At4g09680.1 68417.m01590 expressed protein                             29   3.6  
At3g49990.1 68416.m05466 expressed protein                             29   3.6  
At2g10350.1 68415.m01087 Ulp1 protease family protein similar to...    29   3.6  
At1g51670.1 68414.m05821 expressed protein                             29   3.6  
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp...    28   4.8  
At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) / rotund...    28   6.4  
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P...    28   6.4  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    28   6.4  
At5g35995.1 68418.m04334 F-box family protein contains F-box dom...    27   8.4  

>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score =  126 bits (304), Expect = 1e-29
 Identities = 68/200 (34%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
 Frame = +2

Query: 68  ETDENECLNQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ--YQHILDKA 241
           E  EN  LN +   S +V DT  F+  + + PT AT + +L+L   G+    +++ +D A
Sbjct: 64  EAGENNELNAVSAFSEIVPDTVVFDDFERFPPTAATVSSALLLGICGLPDTIFRNAVDMA 123

Query: 242 IKYGKDNG-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIK 418
           +      G  + E +++   +   V  G +++K++PGRVS EVDARL++D +  I K   
Sbjct: 124 LADSSCAGLETTESRLSCFFNKAIVNVGGDLVKLVPGRVSTEVDARLAYDTNGIIRKVHD 183

Query: 419 FINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVT 598
            + L+ E  +  +R+L K+ +TW+GI+AA+ LE + GI  ++T ++S  QA A ++A  +
Sbjct: 184 LLRLYNEIDVPHDRLLFKIPATWQGIEAARLLESE-GIQTHMTFVYSFAQAAAASQAGAS 242

Query: 599 LISPFVGRILDWYVEHTKKT 658
           +I  FVGR+ DW   H+  T
Sbjct: 243 VIQIFVGRLRDWARNHSGDT 262


>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
 Frame = +2

Query: 104 QHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQ 283
           +H  V  D   FEA       D     ++     G+++ + I D+A  Y KD+   ++E+
Sbjct: 514 KHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDRANTYNKDSTPELKEE 573

Query: 284 VAETL-DMLSVLFGCEIL---KIIPGRVSVEVDARLSFDKDASIAKAIKFIN-LFAEHGI 448
            A  L D L++  G   L   +++  ++  +V  R    ++    +  ++ + LF E   
Sbjct: 574 RAMLLEDWLNMETGFGKLGDVRVVQSKLPKKVKKRKLSSREDGCTEYEEYTDYLFPEESE 633

Query: 449 KKERILIKLASTWE 490
                +++ A  W+
Sbjct: 634 TTSLKILEAAHKWK 647


>At3g25130.1 68416.m03138 expressed protein 
          Length = 406

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 471 LIKILSFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFN 331
           + KILSFL P      + L+A      + +  L S S +T+P  +F+
Sbjct: 52  IFKILSFLSPLFVTTTLLLLALLSTLHVQDTCLDSESLETQPSFLFS 98


>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
           contains Pfam domian PF00096: Zinc finger, C2H2 type
          Length = 302

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 424 QFIC*TWY*KRKNFN*IGLHLGRNSSSQRVGEEAWNPL*SYTVVLFVPSYCLC*SKCYTN 603
           QF C         FN + +H+  + S  R G E+     S + +L +P YC C   C  N
Sbjct: 100 QFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSSILRLPCYC-CAEGCKNN 158

Query: 604 I 606
           I
Sbjct: 159 I 159


>At4g35410.1 68417.m05029 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 124

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 512 LEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFV 616
           L++  G  C L L+F+ ++ IAC + + TL  PFV
Sbjct: 91  LDRYFGSVCELDLIFNFHKVIACCKHSRTL--PFV 123


>At4g09680.1 68417.m01590 expressed protein
          Length = 1075

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +2

Query: 257 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDAR-LSFDKDASIAKAIKFINLF 433
           D  SSI+    + L   +    CE    +P   SV ++A  L +D   ++ +       F
Sbjct: 445 DRTSSIDVLTPDLLSDRNASRICEGHPGMPDCTSVFIEALVLPWDLICTVTEEEAAAPNF 504

Query: 434 AEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTL 550
            EH   +E    K   T  G+Q+   L   H I C +T+
Sbjct: 505 EEHDTSQEIRPHKRCKTNNGLQSQSFLSVPHEISCQMTI 543


>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 68  ETDENECLNQLKQHSTVVADTGDFEAMKEY-KPTDATTNPSLILSAAGMEQYQHILDKAI 244
           E +E E     +  + +     D+E  ++Y  P D   N   +     ++   H++ + +
Sbjct: 277 EEEEEEDFMAQEVQNLIHGKAKDYELEEKYMNPADILKNSDSVRDKEEVDTAAHVIRRTV 336

Query: 245 KYGK--DNGSSIE 277
           +YG+  DNG+  E
Sbjct: 337 EYGENFDNGNEDE 349


>At2g10350.1 68415.m01087 Ulp1 protease family protein similar to
           At5g28170, At1g35110, At1g44880, At3g42530, At4g19320,
           At5g36020, At4g03970, At3g43010 ; contains Pfam profile
           PF02902: Ulp1 protease family, C-terminal catalytic
           domain
          Length = 1110

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -3

Query: 417 LIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSMELPL 259
           LIAF  +  L  D L   ST     +   ++HPK  +S+ ++ A  S+++LP+
Sbjct: 252 LIAFRNIPGLL-DLLLDDSTSKTILLWKRLTHPKQVISLHQIHALESNLKLPM 303


>At1g51670.1 68414.m05821 expressed protein
          Length = 178

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 435 LNMVLKKKEF*L--NWPPLGKEFKQPKSWRRSMESI 536
           LN  LKK       +WPPLG E K P S+  ++ S+
Sbjct: 85  LNFALKKGGIPRAEDWPPLGSESKTPSSYEPALVSM 120


>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 930

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
 Frame = +2

Query: 65  YETDEN--ECLNQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDK 238
           + TDEN  E  + L   + V    G+   + E  P     NP   L   G + ++H  + 
Sbjct: 198 FYTDENTKETPDSLVSETEVETSLGEDIKISESTPV-YVLNPKQDLHGLGYDPFKHAPEF 256

Query: 239 AIKYGKDNGSSIEEQVAETLDMLSVLFGCEILKIIPG 349
             K      ++ E    + L M   LFG +  KI PG
Sbjct: 257 REKKRSRMSANKEVGFRKPLSMKESLFGPKSGKIAPG 293


>At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) /
           rotundifolia3 (ROT3) identical  to Cytochrome P450 90C1
           (ROTUNDIFOLIA3) (SP:Q9M066) [Arabidopsis thaliana];
          Length = 524

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +2

Query: 116 VVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAET 295
           ++ D GD E  K+ +P+D  +   + +   G E     +  A+K+  DN  ++ + V E 
Sbjct: 295 LLRDGGDSE--KQSQPSDFVSGKIVEMMIPGEETMPTAMTLAVKFLSDNPVALAKLVEEN 352

Query: 296 LDM 304
           ++M
Sbjct: 353 MEM 355


>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to  At5g28170, At1g35110,
           At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
           At2g10350
          Length = 1043

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 423 INLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSMELPL 259
           + LIAF  +  L  D +   ST     +   ++HPK  +S+ ++ A  S+++LP+
Sbjct: 211 LQLIAFRNIPGLL-DLVLDDSTSKTILLWKRLTHPKQVISLPQIHALESNLKLPV 264


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
            contains Pfam domain, PF00642: Zinc finger
            C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +2

Query: 104  QHSTVVADTGDFEAMKEYKPTDATTNPSLILS----AAGMEQYQHILDKAIKYGKDNGSS 271
            Q++TV AD G+    K  +  D T   S+ ++    A  + Q  H LD      K +   
Sbjct: 823  QYNTVRAD-GNHNTTKTLE--DETNGGSVSINGSVHAPNLNQESHFLDFPSPTPKSSPED 879

Query: 272  IEEQVAETLDMLS 310
            +E Q AET+  LS
Sbjct: 880  LEAQAAETIQSLS 892


>At5g35995.1 68418.m04334 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 207 PAAESIKLGFVVASVGLYSFMASKSPV 127
           PA +++ LG VVA   LY+++ S  PV
Sbjct: 153 PALKTLSLGAVVAKPALYNWLISGCPV 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,067,072
Number of Sequences: 28952
Number of extensions: 315556
Number of successful extensions: 908
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)