Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0801
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    29   0.31 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    29   0.31 
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.2  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   3.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   3.8  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   5.0  
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub...    25   5.0  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    24   6.7  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    24   6.7  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    24   6.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    24   8.8  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    24   8.8  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 12/57 (21%), Positives = 28/57 (49%)
 Frame = -2

Query: 254 AQLEDLSTTLNLRMAQHEEDLKNAATTDLPHKTIASLSREFAEFKSFVCNAISTLKT 84
           + ++D  T +N R+ +  E  +N   +++  +T+        +++  +CN    LKT
Sbjct: 519 SSMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKT 575


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +1

Query: 76  SI*VFKVLIALHTKDLNSANSRDKLAMVLCGRSVVAAFFKSSSCCAILKFSVVDKSSSCA 255
           S+ V+K +  LHT+      S DKL  +    S +  F+    C   + FS+  K  SC 
Sbjct: 235 SLKVYKTISPLHTQ------STDKLYTIWTPFSELHYFY----CATPITFSIASKILSCC 284

Query: 256 NSLE*ISMVMIIKFLV 303
             L+ + +V +I  L+
Sbjct: 285 KKLKQVELVDLIPDLI 300


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 25/96 (26%), Positives = 37/96 (38%)
 Frame = -2

Query: 320 SSELTQTKNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNAATTDLPHKTIASLS 141
           S+ L  T   +  T D   +L   L  L   L       ++ L+N       H  I  ++
Sbjct: 530 SNNLELTSESLSSTNDTIRRLQRDLLFLQNELRFEKFVRQQHLQNIGKLHREH--ILDMA 587

Query: 140 REFAEFKSFVCNAISTLKTQIELLTLGLDRHEMMSR 33
            E    K  + N     K QIELL   +D+H   S+
Sbjct: 588 VESERQKLLLTN--KRYKAQIELLNSEIDKHRSESQ 621


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -2

Query: 341 SHFNNYFSSELTQTKNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNAATTDLP 165
           S FN    SE         I MD++ K    +E +    NL+ ++ ++ +    +T +P
Sbjct: 316 SFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRIP 374


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 179 TTDLPHKTIASLSRE 135
           +TD+PH  IAS+S+E
Sbjct: 730 STDIPHVVIASISKE 744


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/22 (45%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -1

Query: 243 RLVYNTELKNGTTRRR-FEECS 181
           R +Y+T++KN +T+++ FEE S
Sbjct: 347 RKIYDTDIKNVSTKKKDFEETS 368


>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
           subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 125

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 299 KNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNAA 180
           +N + +T+DI S+++   +D + +L +    +  DLK AA
Sbjct: 33  QNDMNLTLDINSQIYPLEKDATFSLQITSNLNSPDLKEAA 72


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 284 ITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNAATTD-LPHKTIASLSREFAEFKS 117
           I++  + K+ ++ E L   LN+  ++  E  K    TD L   +I SL ++  +F S
Sbjct: 366 ISISEFEKMVSEREQLDRNLNMIGSKISELRKEVFDTDLLIQASIDSLEKKVQKFNS 422


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 222 VQCCRQVFQLCK*FGVNI 275
           VQ CR ++++C+ FG  +
Sbjct: 69  VQKCRNIYEICEAFGYRV 86


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 89  SKYLLHYTQRI*IQQTHGINSLWFYVGDLW 178
           S +     +RI     HGIN  WF + + W
Sbjct: 444 SDWHFRINKRIRESSLHGINRCWFVMEEEW 473


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 209  QHEEDLKNAATTDLPHKTIASLSREFAEFKSF 114
            +H+E+ K     ++  KT+A  + EFAE  +F
Sbjct: 1125 EHKEENKKYDNVNI-QKTLAKCAEEFAEHTNF 1155


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 179 TTDLPHKTIASLSREFAEFKSFVCNAISTLKTQIELLTLGLDRHEMMSRRKVLLLH 12
           T D   K +A  SR   EF++ + +   TL +++  L LG          KVL  H
Sbjct: 722 TLDDYGKLLAHFSRLAPEFQTGMLDMFRTLNSRVYQLILGAGTVRSSGLSKVLGKH 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,494
Number of Sequences: 5004
Number of extensions: 28376
Number of successful extensions: 83
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)