Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0801
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0752 - 20795447-20795502,20795673-20795893,20795998-207960...    29   1.2  
03_06_0584 + 34909800-34910261                                         29   1.2  
09_06_0355 - 22492162-22492311,22492414-22492698,22492798-224931...    29   1.5  
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    27   4.7  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    27   4.7  
08_02_1118 - 24419167-24420130,24420456-24420463                       27   6.2  

>08_02_0752 -
           20795447-20795502,20795673-20795893,20795998-20796083,
           20796315-20796405,20796499-20796584,20796705-20796807,
           20796888-20796985,20797771-20797950
          Length = 306

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 273 YLLQTICTTGRLVYNTELKNGTTRRRFEE 187
           YL+QT+C TG   +++ L+ GT R   EE
Sbjct: 168 YLMQTVCVTG---FDSSLEIGTIRHALEE 193


>03_06_0584 + 34909800-34910261
          Length = 153

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 9   PMKQQYFSTRHHFVSVQAQSKQLDLSFQSTY 101
           P    +FS    F S++A SK+LD+S  +TY
Sbjct: 29  PASLSFFSQGMQFPSLKASSKKLDVSAMATY 59


>09_06_0355 -
           22492162-22492311,22492414-22492698,22492798-22493125,
           22493523-22493674,22493878-22493969,22495948-22496107
          Length = 388

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = -2

Query: 347 QYSHFNNYFSSELTQTKNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNAATTDL 168
           Q+  +      EL  TK+      + Y KL + L D  T+  +  A  E      A+T L
Sbjct: 125 QHQRWGEQMDVELLHTKSR---REETYDKLQSVLGDSLTSCEIESATEEMSSCLQASTLL 181

Query: 167 PHKTIASL-SREFAEFKSFVCNAIS 96
           PH  +  + + E  E +S  C  +S
Sbjct: 182 PHSAVEEMFNVEVVEEQSRSCGGLS 206


>09_02_0077 +
           3964729-3964734,3965194-3965289,3965744-3973579,
           3973665-3973982,3974565-3974763,3974937-3975202,
           3975288-3975574,3976714-3977818,3977900-3978046,
           3978146-3978226,3978315-3978540,3978622-3978761,
           3979539-3979645,3979739-3979841
          Length = 3638

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 273 YLLQTICTTGRLVYNTELKNGTTRRRFEE 187
           YL + IC  GRL+  T L+N  T R F E
Sbjct: 662 YLPECICNVGRLI-ETILQNSDTCRLFSE 689


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = -2

Query: 269 YSKLFAQLEDLSTTLNLRMAQHE---EDLKN--AATTDLPHKTIASLSREFAEFKSFVCN 105
           Y++   +LE+    LN ++   E   E +K   AAT  L  +TI     E A  K F  N
Sbjct: 542 YNEQVRELEEEKQRLNSKIQVEETKVESIKRDKAATEKLLQETIERNQTELAAQKEFYTN 601

Query: 104 AISTLK 87
           A++  K
Sbjct: 602 ALNAAK 607


>08_02_1118 - 24419167-24420130,24420456-24420463
          Length = 323

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 272 IYSKLFAQLEDLSTTLNLRMAQHEEDLKNAATTDLPHKTIASLSR 138
           IY++LF  L   +   ++R + H ED   + +  +   T++S +R
Sbjct: 232 IYAELFYALNARAPDASVRTSHHNEDASASTSATIQQFTLSSSAR 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,133,229
Number of Sequences: 37544
Number of extensions: 157190
Number of successful extensions: 350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)