Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0801
(372 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 34 0.042
SB_40881| Best HMM Match : RVT_1 (HMM E-Value=2.9e-21) 29 1.2
SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024) 29 1.2
SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53) 29 1.2
SB_49165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08) 28 2.8
SB_16019| Best HMM Match : AT_hook (HMM E-Value=1) 27 3.7
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_17689| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_9411| Best HMM Match : Exo_endo_phos (HMM E-Value=0.19) 27 4.9
SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6) 27 6.4
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45) 26 8.5
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051) 26 8.5
SB_49272| Best HMM Match : CAT_RBD (HMM E-Value=2) 26 8.5
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 26 8.5
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 33.9 bits (74), Expect = 0.042
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = -2
Query: 347 QYSHFNNYFSSELTQTKNL-IIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNAATTD 171
++ H YF S QT + S LF Q+ D+S+ L + A + A T
Sbjct: 197 EFGHAIGYFHSTTDQTATTPSTFSGTTSSHLFFQMPDMSSCLGFKDAFKKYQFSEANTQG 256
Query: 170 LPHKTIASLSREFAEF-KSFVCNAISTLKTQ--IELLTLGLDRHEMMSRRKVLLLHG 9
LP+ + + E F K+ C T+K+ E+ + L +K+ +L+G
Sbjct: 257 LPYDLTSIMHYENTAFAKAGFCKTTITVKSDPTYEISPVYLREFSPQDIKKINMLYG 313
>SB_40881| Best HMM Match : RVT_1 (HMM E-Value=2.9e-21)
Length = 426
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = -2
Query: 344 YSHFNNYFSSELTQTKNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNAATTDLP 165
YS F+ EL +T I++ + A LED+ + L + E D+ A +
Sbjct: 312 YSKFHKRRMEELNETGLHNFISLFLTLSSVADLEDVVSLFALMLVYKERDVDCAHLSTKM 371
Query: 164 HKTIASLSREFAEFKS 117
+ + +++EFAE S
Sbjct: 372 ADSFSLIAKEFAEVYS 387
>SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)
Length = 1163
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 365 RLCRHLQYSHFNNYFSSELTQTKN 294
+LCR +Y+H+NN S+LT N
Sbjct: 194 KLCRRKKYTHYNNIQMSKLTDLVN 217
Score = 27.1 bits (57), Expect = 4.9
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Frame = -2
Query: 365 RLCRHLQYSHFNNYFSS-ELTQTKNLIIITMDIY-SKLFAQLEDLSTTLNLRMAQHEEDL 192
+LCR +Y+H+NN +S + +KN I+ S Q + QH E L
Sbjct: 991 KLCRRKKYTHYNNIVNSIDFRNSKNTWKQINRIFNSNTHKQSHQIRPEEAAVFHQHFEQL 1050
Query: 191 ----KNAATTDLPHKTIAS-----LSREFAEFKSFVCNAISTLKT 84
++ T + KT + L EF E + + NAI +LKT
Sbjct: 1051 NATIESQNTMEEVEKTRINNRQGPLDHEFTELE--ITNAIKSLKT 1093
>SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)
Length = 319
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = -2
Query: 242 DLSTTLNLRMAQHEEDLKNAATTDLPHKTIASLSREFAEFKSFVCNAISTLKTQI--ELL 69
D+ TT+ + ++Q E ++K + H T+ ++R ++ +++ KT I +L
Sbjct: 51 DIFTTIGVTISQLEREVKLPYLNKISHATLVDVTRVAILLLNYYFISVAPEKTSICYKLR 110
Query: 68 TLGLDRHEMM 39
+ GLD E++
Sbjct: 111 SFGLDGAEII 120
>SB_49165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 206 HEEDLKNAATTDLPHKTIASLSREFAEFK-SFVCNAISTLKTQIELLTLGLDRH 48
++ D + D H T+A L+ + ++F S + +S L +EL L LDRH
Sbjct: 261 YKPDSRVFTPRDGGHWTLAKLNLQLSDFGYSQMVEHLSKLHFPVELYCLSLDRH 314
>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
Length = 1167
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 317 SELTQTKNLIIITMDI--YSKLFAQLEDLSTTLNLRMAQHEEDLKNAATTDLPHK 159
S T T+NL T+ I Y+ + + + N R A+H DL+ PHK
Sbjct: 985 SSSTMTRNLNHTTLPIVQYNGCYGYMFHIPLNANRRFARHRFDLRCIGQLKNPHK 1039
>SB_16019| Best HMM Match : AT_hook (HMM E-Value=1)
Length = 429
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 242 DLSTTLNLRMAQHEEDLKNAATTDLPHKTIASLSREFAEFKSFV 111
D+ ++ E DLK+A +LP T+A+ R E K V
Sbjct: 299 DVDDAKDMSSKTKEMDLKDAEPLELPDCTVATFERRVGETKKSV 342
>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 27.1 bits (57), Expect = 4.9
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Frame = -2
Query: 365 RLCRHLQYSHFNNYFSS-ELTQTKNLIIITMDIY-SKLFAQLEDLSTTLNLRMAQHEEDL 192
+LCR +Y+H+NN +S + +KN I+ S Q + QH E L
Sbjct: 746 KLCRRKKYTHYNNIVNSIDFRNSKNTWKQINRIFNSNTHKQSHQIRPEEAAVFHQHFEQL 805
Query: 191 ----KNAATTDLPHKTIAS-----LSREFAEFKSFVCNAISTLKT 84
++ T + KT + L EF E + + NAI +LKT
Sbjct: 806 NATIESQNTMEEVEKTRINNRQGPLDHEFTELE--ITNAIKSLKT 848
>SB_17689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 27.1 bits (57), Expect = 4.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -2
Query: 251 QLEDLSTTLNLRMAQHEEDLKNAATTDLPHKTIASLSREFAEFKSFVCNAISTLKTQ 81
+++ L +N Q+E L + DL +K REF E + +C A+ L+ +
Sbjct: 3 EIDTLKEEMNEAHYQYECLLDSDTERDLSYKWFDVRDREFTEERLKICEALQQLERE 59
>SB_9411| Best HMM Match : Exo_endo_phos (HMM E-Value=0.19)
Length = 891
Score = 27.1 bits (57), Expect = 4.9
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Frame = -2
Query: 365 RLCRHLQYSHFNNYFSS-ELTQTKNLIIITMDIY-SKLFAQLEDLSTTLNLRMAQHEEDL 192
+LCR +Y+H+NN +S + +KN I+ S Q + QH E L
Sbjct: 788 KLCRRKKYTHYNNIVNSIDFRNSKNTWKQINRIFNSNTHKQSHQIRPEEAAVFHQHFEQL 847
Query: 191 ----KNAATTDLPHKTIAS-----LSREFAEFKSFVCNAISTLKT 84
++ T + KT + L EF E + + NAI +LKT
Sbjct: 848 NATIESQNTMEEVEKTRINNRQGPLDHEFTELE--ITNAIKSLKT 890
>SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 27.1 bits (57), Expect = 4.9
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Frame = -2
Query: 365 RLCRHLQYSHFNNYFSS-ELTQTKNLIIITMDIY-SKLFAQLEDLSTTLNLRMAQHEEDL 192
+LCR +Y+H+NN +S + +KN I+ S Q + QH E L
Sbjct: 173 KLCRRKKYTHYNNIVNSIDFRNSKNTWKQINRIFNSNTHKQSHQIRPEEAAVFHQHFEQL 232
Query: 191 ----KNAATTDLPHKTIAS-----LSREFAEFKSFVCNAISTLKT 84
++ T + KT + L EF E + + NAI +LKT
Sbjct: 233 NATIESQNTMEEVEKTRINNRQGPLDHEFTELE--ITNAIKSLKT 275
>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 27.1 bits (57), Expect = 4.9
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Frame = -2
Query: 365 RLCRHLQYSHFNNYFSS-ELTQTKNLIIITMDIY-SKLFAQLEDLSTTLNLRMAQHEEDL 192
+LCR +Y+H+NN +S + +KN I+ S Q + QH E L
Sbjct: 43 KLCRRKKYTHYNNIVNSIDFRNSKNTWKQINRIFNSNTHKQSHQIRPEEAAVFHQHFEQL 102
Query: 191 ----KNAATTDLPHKTIAS-----LSREFAEFKSFVCNAISTLKT 84
++ T + KT + L EF E + + NAI +LKT
Sbjct: 103 NATIESQNTMEEVEKTRINNRQGPLDHEFTELE--ITNAIKSLKT 145
>SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 353 HLQYSHFNNYFSSELTQTKNLIIITMDIYSKL 258
H+++ + NN+ S +L N TM+I+ +L
Sbjct: 364 HIKHDYNNNFLSDQLHNAGNDAYYTMEIFKEL 395
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 26.6 bits (56), Expect = 6.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 263 KLFAQLEDLSTTLNLRMAQHEEDLKNAATTDLPHKTIASLSREFAEFKSFV 111
K A EDL++TL MA A DLP A +R+ A+ K +
Sbjct: 629 KHVASTEDLNSTLGSEMAAGAAGYVVAKEKDLPKLHKAVWTRDMAKLKQLI 679
>SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6)
Length = 220
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 24 YFSTRHHFVSVQAQSKQLDLSFQSTYCITHKGFKFSKLT 140
Y ST H++S + Q+ + L Y TH+ SK+T
Sbjct: 17 YPSTHRHYLSKKTQASLIILHTGYAYPTTHRLLHLSKIT 55
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 275 DIYSKLFAQLEDLSTTLNLRMAQHEEDLKNAA 180
D +L +LEDLSTT+ A++E LK A
Sbjct: 485 DDNERLEDELEDLSTTIKRGRAEYERILKENA 516
>SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45)
Length = 469
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 365 RLCRHLQYSHFNNYFSS-ELTQTKN 294
+LCR +Y+H+NN +S + +KN
Sbjct: 43 KLCRRKKYTHYNNIVNSIDFRNSKN 67
>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
Length = 891
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 365 RLCRHLQYSHFNNYFSS-ELTQTKN 294
+LCR +Y+H+NN +S + +KN
Sbjct: 819 KLCRRKKYTHYNNIVNSIDFRNSKN 843
>SB_49272| Best HMM Match : CAT_RBD (HMM E-Value=2)
Length = 318
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 365 RLCRHLQYSHFNNYFSS-ELTQTKN 294
+LCR +Y+H+NN +S + +KN
Sbjct: 232 KLCRRKKYTHYNNIVNSIDFRNSKN 256
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 371 PLRLCRHLQYSHFNNYFSSELTQTKNL 291
P RLC L YSH+N +L + L
Sbjct: 263 PSRLCFSLNYSHYNEKLQVKLIRATRL 289
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,010,550
Number of Sequences: 59808
Number of extensions: 198503
Number of successful extensions: 435
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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