Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0801
         (372 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2855|AAF57579.1|  655|Drosophila melanogaster CG7461-PA...    31   0.48 
BT009929-1|AAQ22398.1| 1936|Drosophila melanogaster SD16537p pro...    29   2.0  
AE014298-2825|AAF48942.2| 1936|Drosophila melanogaster CG8002-PA...    28   3.4  
AY118555-1|AAM49924.1|  743|Drosophila melanogaster LD35784p pro...    27   6.0  
AF279146-1|AAF99080.1|  743|Drosophila melanogaster replication ...    27   6.0  
AE014298-1069|AAF46280.1| 1767|Drosophila melanogaster CG15327-P...    27   6.0  
AE013599-2051|AAF58141.2|  743|Drosophila melanogaster CG8171-PA...    27   6.0  

>AE013599-2855|AAF57579.1|  655|Drosophila melanogaster CG7461-PA
           protein.
          Length = 655

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = -2

Query: 335 FNNYFSSELTQTKNLIIITMDIYSKLFAQLEDL-STTLNLRMAQHEEDLKNAATTDLPHK 159
           +N    +E      L    +DIY+ +  Q     +  LNL  AQHE ++  A T     +
Sbjct: 554 YNKNIVNEQILLTRLANAAIDIYAMVVTQSRSSRAVNLNLPTAQHELNMTKALTIQASDR 613

Query: 158 TIASLSREFAEFKSFVCNAISTL-KTQIE 75
            I +L    +     +   IST+ KT +E
Sbjct: 614 VIKNLQAATSSHHRSLNEKISTIAKTTLE 642


>BT009929-1|AAQ22398.1| 1936|Drosophila melanogaster SD16537p protein.
          Length = 1936

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -2

Query: 320  SSELTQTKNLIIITMDIYSKLFAQLEDLSTTL----NLRMAQHEEDLKNAATTDL 168
            ++ +T T ++   T D++ ++   +   S TL    NLR  +H+  L  + TTD+
Sbjct: 1136 NATITTTDSVCTTTDDVHPRMLVGVAAKSKTLPEGSNLRQGKHQRSLSESKTTDV 1190


>AE014298-2825|AAF48942.2| 1936|Drosophila melanogaster CG8002-PA
            protein.
          Length = 1936

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -2

Query: 320  SSELTQTKNLIIITMDIYSKLFAQLEDLSTTL----NLRMAQHEEDLKNAATTDL 168
            ++ +T T ++   T D++ ++   +   S TL    NLR  +H+  L  + TTD+
Sbjct: 1136 NATITTTDSVRTTTDDVHPRMLVGVAAKSKTLPEGSNLRQGKHQRSLSESKTTDV 1190


>AY118555-1|AAM49924.1|  743|Drosophila melanogaster LD35784p
           protein.
          Length = 743

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
 Frame = -2

Query: 254 AQLEDLSTTLNLRMA----QHEEDLKNAATTDL-PHKTIASLSREFAEFKSF----VCNA 102
           A+L++L   L L+ A    + E++ +N    D  P  + + +S +  EF +     + + 
Sbjct: 191 AKLQELKAVLALKAALEQKRKEQEERNRKLRDAGPSPSKSKMSVQLKEFDTIELEVLISP 250

Query: 101 ISTLKTQIELLTLGLDRHEMMSRR 30
           + T KT  ++     D+HE+MS R
Sbjct: 251 LKTFKTPTKIPPPTPDKHELMSPR 274


>AF279146-1|AAF99080.1|  743|Drosophila melanogaster replication
           protein double parked protein.
          Length = 743

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
 Frame = -2

Query: 254 AQLEDLSTTLNLRMA----QHEEDLKNAATTDL-PHKTIASLSREFAEFKSF----VCNA 102
           A+L++L   L L+ A    + E++ +N    D  P  + + +S +  EF +     + + 
Sbjct: 191 AKLQELKAVLALKAALEQKRKEQEERNRKLRDAGPSPSKSKMSVQLKEFDTIELEVLISP 250

Query: 101 ISTLKTQIELLTLGLDRHEMMSRR 30
           + T KT  ++     D+HE+MS R
Sbjct: 251 LKTFKTPTKIPPPTPDKHELMSPR 274


>AE014298-1069|AAF46280.1| 1767|Drosophila melanogaster CG15327-PA
            protein.
          Length = 1767

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = -2

Query: 200  EDLKNAATTDLP----HKTIASLSREFAEFKSFVCNAISTLKTQ--IELLTLGLDRHEMM 39
            ++L     TD P    H +  S++  FAE  SFV  A++ L     I ++  GL   E++
Sbjct: 1695 DNLPTTTDTDTPGKRIHSSTESVATGFAESMSFVVAALNCLMGALCISIVVFGL---ELL 1751

Query: 38   SRRK 27
            SRR+
Sbjct: 1752 SRRR 1755


>AE013599-2051|AAF58141.2|  743|Drosophila melanogaster CG8171-PA
           protein.
          Length = 743

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
 Frame = -2

Query: 254 AQLEDLSTTLNLRMA----QHEEDLKNAATTDL-PHKTIASLSREFAEFKSF----VCNA 102
           A+L++L   L L+ A    + E++ +N    D  P  + + +S +  EF +     + + 
Sbjct: 191 AKLQELKAVLALKAALEQKRKEQEERNRKLRDAGPSPSKSKMSVQLKEFDTIELEVLISP 250

Query: 101 ISTLKTQIELLTLGLDRHEMMSRR 30
           + T KT  ++     D+HE+MS R
Sbjct: 251 LKTFKTPTKIPPPTPDKHELMSPR 274


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,565
Number of Sequences: 53049
Number of extensions: 296449
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 984962268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)