Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0801
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-3|CAB02829.1|  389|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z81095-4|CAB03160.1|  262|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81089-7|CAB03139.1|  262|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z68012-5|CAA92019.1|  408|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical...    27   5.7  
Z81521-2|CAB04224.1|  514|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AF076840-1|AAC95522.1|  514|Caenorhabditis elegans Rad17-like pr...    26   7.5  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    26   7.5  
Z92803-6|CAB07240.1|  215|Caenorhabditis elegans Hypothetical pr...    26   9.9  
Z78415-2|CAB01672.1|  280|Caenorhabditis elegans Hypothetical pr...    26   9.9  
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    26   9.9  

>Z81047-3|CAB02829.1|  389|Caenorhabditis elegans Hypothetical
           protein C41G6.5 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 137 EFAEFKSFVCNAISTLKTQIELLTLGLDRHEMMS 36
           EFA FKSF    +   KT + + T+G + +E +S
Sbjct: 290 EFAAFKSFFVWKLVFHKTSVAMKTIGQEHYECVS 323


>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
           protein K10B4.3 protein.
          Length = 871

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = -2

Query: 320 SSELTQTKNLIIITMDIYSKLFAQLEDLSTTL-NLRMAQHEEDLKNAATTDLPHKTIASL 144
           SS +  TK  ++I       ++     +ST L N+ M+   ++   + +  LP   +A+ 
Sbjct: 227 SSMVANTKPDVLIPFLPRFDVYLLSPQMSTALLNIYMSLISQNRTKSLSQFLPTLKLAAQ 286

Query: 143 SREFAEFKSFVCNAISTL-KTQIELLTLGLDRHEMMSR 33
           S EF   ++ +C  I+ + +    L +  +D   +M+R
Sbjct: 287 SNEFINNRTTICKIIANIGRVSSPLASEAVDELVLMAR 324


>Z81095-4|CAB03160.1|  262|Caenorhabditis elegans Hypothetical
           protein F59F4.4 protein.
          Length = 262

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -2

Query: 371 PLRLCRHLQYSHFNNYFSSELTQTKNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDL 192
           P+  C    +  F ++    LT    +I I  ++ S  F  ++DLS      M  H E L
Sbjct: 194 PIVPCVFSSHKFFYSHAEKRLTSGNCIIDILPEVDSSKFDSIDDLSAHCRKIMQAHREKL 253


>Z81089-7|CAB03139.1|  262|Caenorhabditis elegans Hypothetical
           protein F59F4.4 protein.
          Length = 262

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -2

Query: 371 PLRLCRHLQYSHFNNYFSSELTQTKNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDL 192
           P+  C    +  F ++    LT    +I I  ++ S  F  ++DLS      M  H E L
Sbjct: 194 PIVPCVFSSHKFFYSHAEKRLTSGNCIIDILPEVDSSKFDSIDDLSAHCRKIMQAHREKL 253


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 163  CGRSVVAAFFKSSSCCAILKFSVVDKSSSCA 255
            C  SV    F  +SCCA  K  +V K+ +CA
Sbjct: 1332 CANSV--CLFPRTSCCAPYKKKIVGKTFACA 1360


>Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical
           protein T02G6.5 protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 365 RLCRHLQYSHFNNYFSSELTQTKNLIIITMDIYSKL 258
           +LC+++ +S F   FS+   QT ++  +TM ++ +L
Sbjct: 51  KLCKYILFSIFYTAFSNTFRQTMDVENLTMFMFIRL 86


>Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 350 LQYSHFNNYFSSELTQTKNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNA 183
           L YSH    F   + ++ N+I+ T       F  ++ LST +          L+NA
Sbjct: 59  LAYSHVIPQFLVSIYESSNVILTTSQFLQSFFFHVQSLSTIVICTHRLSAAKLENA 114


>Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical
           protein C54G4.9 protein.
          Length = 464

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 353 HLQYSHFNNYFSSELTQTKNLIIITMDIYSKLFAQLE 243
           HL+   F N+F  E T  K      + ++++++ ++E
Sbjct: 215 HLEVKEFTNFFQIESTYHKEQACQMLQVFNQIYKRME 251


>Z68012-5|CAA92019.1|  408|Caenorhabditis elegans Hypothetical
           protein T24D5.5 protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = -2

Query: 362 LCRHLQYSHFNNYFSSELTQTKNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNA 183
           LC    Y   NN+ S  LT   +++ +T+D Y+    Q  +      L  A  +   KN+
Sbjct: 66  LCSMCLYGFSNNFRS--LTAIWSIVAVTVDAYNTAGRQTSNQLNRAILIDALPQNHTKNS 123

Query: 182 ATTDLPHKTIASLSRE 135
           +     ++ +AS   E
Sbjct: 124 SNRQNTYEPVASKKSE 139


>AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 350 LQYSHFNNYFSSELTQTKNLIIITMDIYSKLFAQLEDLSTTLNLRMAQHEEDLKNA 183
           L YSH    F   + ++ N+I+ T       F  ++ LST +          L+NA
Sbjct: 59  LAYSHVIPQFLVSIYESSNVILTTSQFLQSFFFHVQSLSTIVICTHRLSAAKLENA 114


>Z81521-2|CAB04224.1|  514|Caenorhabditis elegans Hypothetical
           protein F32A11.2 protein.
          Length = 514

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   VDPMKQQYFSTRHHFVSVQAQSKQLDLSFQSTYCITHKGFKFSKL 137
           +DP + +YF +R   ++ Q  + +++   +  Y + +KG K  +L
Sbjct: 432 IDPQRIEYFLSRPMDINWQWGNDKIEEHLEKQYALDYKGRKKHRL 476


>AF076840-1|AAC95522.1|  514|Caenorhabditis elegans Rad17-like
           protein protein.
          Length = 514

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   VDPMKQQYFSTRHHFVSVQAQSKQLDLSFQSTYCITHKGFKFSKL 137
           +DP + +YF +R   ++ Q  + +++   +  Y + +KG K  +L
Sbjct: 432 IDPQRIEYFLSRPMDINWQWGNDKIEEHLEKQYALDYKGRKKHRL 476


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -2

Query: 155  IASLSREFAEFKSFVCNAISTLKTQIELLTLGLDRHEMMSRRKV 24
            + +      E K+    A+   K Q+EL  + +DR++ + R K+
Sbjct: 1132 VDAFENRIKEIKASAQLAVQGYKEQLELKEIAIDRYKKLLREKI 1175


>Z92803-6|CAB07240.1|  215|Caenorhabditis elegans Hypothetical
           protein K01G5.4 protein.
          Length = 215

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 215 MAQHEEDLKNAATTDLP 165
           +A++E+DL NAA  DLP
Sbjct: 193 IAEYEKDLDNAAKADLP 209


>Z78415-2|CAB01672.1|  280|Caenorhabditis elegans Hypothetical
           protein C17G1.2 protein.
          Length = 280

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 137 EFAEFKSFVCNAISTLKTQIELLTLGLDRHEMM 39
           E+ +FKSF  NA+   K     +T    RH ++
Sbjct: 118 EYIDFKSFSKNAVYVAKRSGHRITYNFTRHSLI 150


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 332 NNYFSSELTQTKNLIIITMDIYSKLFAQLEDL 237
           NN    ELT+TKN +   MD   KL  ++  +
Sbjct: 149 NNNLEYELTETKNFLQANMDNCQKLQQEITQM 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,296,665
Number of Sequences: 27780
Number of extensions: 157076
Number of successful extensions: 419
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)