Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0801
(372 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61040.2 68416.m06831 cytochrome P450 family protein similar ... 27 5.3
At3g61040.1 68416.m06830 cytochrome P450 family protein similar ... 27 5.3
At1g23970.2 68414.m03027 expressed protein contains Pfam profile... 27 5.3
At1g23970.1 68414.m03026 expressed protein contains Pfam profile... 27 5.3
At3g47700.1 68416.m05196 chromosome structural maintenance prote... 26 7.0
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ... 26 9.2
At3g23120.1 68416.m02914 leucine-rich repeat family protein cont... 26 9.2
At3g02410.1 68416.m00228 hypothetical protein weak similarity to... 26 9.2
At1g54940.1 68414.m06274 glycogenin glucosyltransferase (glycoge... 26 9.2
>At3g61040.2 68416.m06831 cytochrome P450 family protein similar to
cytochrome P450 monooxygenase - Arabidopsis thaliana,
EMBL:D78600
Length = 395
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 179 TTDLPHKTIASLSREFAEFKSFVCNAISTL 90
T + PH+++A LSR + SF ++T+
Sbjct: 49 TVEKPHRSLADLSRIYGSVMSFKLGCLTTV 78
>At3g61040.1 68416.m06830 cytochrome P450 family protein similar to
cytochrome P450 monooxygenase - Arabidopsis thaliana,
EMBL:D78600
Length = 498
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 179 TTDLPHKTIASLSREFAEFKSFVCNAISTL 90
T + PH+++A LSR + SF ++T+
Sbjct: 49 TVEKPHRSLADLSRIYGSVMSFKLGCLTTV 78
>At1g23970.2 68414.m03027 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 378
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 22 STFRRDIISCLSRPKVSNSI*VFKVLIALHTKDLNSANSRDK 147
+T R I + +P+V + + + KV I TKD +N R K
Sbjct: 257 TTTDRSITETVQKPEVLSKLEIVKVAIETATKDEEPSNERLK 298
>At1g23970.1 68414.m03026 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 373
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 22 STFRRDIISCLSRPKVSNSI*VFKVLIALHTKDLNSANSRDK 147
+T R I + +P+V + + + KV I TKD +N R K
Sbjct: 252 TTTDRSITETVQKPEVLSKLEIVKVAIETATKDEEPSNERLK 293
>At3g47700.1 68416.m05196 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 795
Score = 26.2 bits (55), Expect = 7.0
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -2
Query: 197 DLKNAATTDLPHKTIASLSREFAEFKSFVCNAISTLKTQIELLTLGLDRHEMMSRRKVLL 18
D+++A + L S S F E + +AI TLKT E+L+ RH +R +
Sbjct: 144 DIEDAVMSSLNKNLRTSRSSGFEEVR---LHAIKTLKTTEEILSSVAKRHPRWARLVSAV 200
Query: 17 LHGVN 3
H V+
Sbjct: 201 DHRVD 205
>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1016
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 168 EICGSCILQIFFVLCHS*VQCCRQVFQLCK*FGVNIH 278
++C +C++ I+F +S QC + + C F +H
Sbjct: 764 KLCQACVMPIYFGNFYSCTQCNYILHEACANFSRKMH 800
>At3g23120.1 68416.m02914 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-5b GB:AAC78595
[Lycopersicon esculentum] (Plant Cell 10, 1915-1926
(1998);
Length = 784
Score = 25.8 bits (54), Expect = 9.2
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = -2
Query: 350 LQYSHFNNYFSSELTQTKNL--IIITMDIYSKLF-AQLEDLSTTLNLRMAQH--EEDLKN 186
L +HF ++FS++L+ NL I + + LF A L +S+ ++++Q+ E +
Sbjct: 212 LSSNHFKSFFSADLSGLHNLEQIFGNENSFVGLFPASLLKISSLDKIQLSQNQFEGPIDF 271
Query: 185 AATTDLPHKTIASLSREFAEFKSFVCNAISTLKTQIELLTLGLDRHEMMSRRKV 24
T+ T+ +S F V +++S L +ELL L + +S R +
Sbjct: 272 GNTSSSSRLTMLDISHN--NFIGRVPSSLSKL-VNLELLDLSHNNFRGLSPRSI 322
>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
kynurenine formamidase [Mus musculus] GI:21552719
Length = 422
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 227 LNLRMAQHEEDLKNAATTDLPHKTIASLSREFAEFKSFVCNAIS 96
L L++A+ + + + P TI+ + + A+ SFVCN IS
Sbjct: 172 LGLQLAERDIIVACLDYRNFPQGTISDMVSDAAQGISFVCNNIS 215
>At1g54940.1 68414.m06274 glycogenin glucosyltransferase
(glycogenin)-related contains similarity to glycogenin-1
from Mus musculus [SP|Q9R062], Rattus norvegicus
[SP|O08730], Homo sapiens [SP|P46976]
Length = 557
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 209 QHEEDLKNAATTDLPHKTIASLSREFAEFKSFVCNAIS 96
+HE++L + A T LP + + +++VC AI+
Sbjct: 252 KHEDNLASKAVTALPRRLRVAYVTVLHSSEAYVCGAIA 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,703,038
Number of Sequences: 28952
Number of extensions: 140699
Number of successful extensions: 362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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