Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0797
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 33 0.039
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 29 0.36
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 29 0.63
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 27 2.6
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 3.4
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 4.5
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 26 4.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 5.9
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 5.9
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 25 7.8
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 25 7.8
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 7.8
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.8
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.8
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 25 7.8
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 32.7 bits (71), Expect = 0.039
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +2
Query: 362 SVLRDWYLHNPYPSPREKRELAET--TGLTTVQVSNWFKNRRQRDRQA 499
++L ++L P PS E++EL++ + +T ++ WF+N+RQ R++
Sbjct: 46 TLLEQYFLKTPKPSLIERQELSKKLKSSMTPRELQIWFQNKRQSLRRS 93
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 29.5 bits (63), Expect = 0.36
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -3
Query: 207 LCNFAWLCALKLCDSSSLYSSLKFPRWKATMAFAFSTDSWA 85
+C+FAW CAL C S + S F R A F FS W+
Sbjct: 92 MCHFAWSCALP-CFVDSFFPSNFFLRTYA--LFTFSLQLWS 129
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 28.7 bits (61), Expect = 0.63
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 YLHNPYPSPREKRELAETTG--LTTVQVSNWFKNRRQRDRQAEHKDSGTGGDKQLDSS 547
+ +P+PSPR K+E G LT V+++F N + + +H + +K L+SS
Sbjct: 457 FAQDPHPSPRLKKEETHENGSNLTNDSVNSYFSNIGGSEVEMKH----SAFEKTLESS 510
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 389 NPYPSPREKRELAETTGLTTVQVSNWFKNRRQRD-----RQAEHKDSGTGGDKQLDS 544
NP P+ REK + + V+ WF+NRR + RQ E + ++LDS
Sbjct: 190 NPPPAIREK--IGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQRELDS 244
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 437 GLTTVQVSNWFKNRRQ 484
GLT VQ SNW RRQ
Sbjct: 899 GLTKVQASNWTGTRRQ 914
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 31 HI*AGEVPLVAAGMRASPRPRVGAEGEGHGRLPP 132
H+ GE P P P V GEG+ LPP
Sbjct: 116 HVHFGEQPTEPIDFADPPLPEVKRYGEGNWLLPP 149
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 246 FAAGH*ERSVNTG*GVNSPSPERYGTERRPLTVLRKSPDPS 368
F GH + N+P + E +TV +KSP PS
Sbjct: 431 FEQGHSQNQTEEQGNSNAPELNKNDYEGEEITVSQKSPSPS 471
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 242 RLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKE 352
R + P+G G Y R + PL +WD +SY ++
Sbjct: 823 RFQQLPVGD-GNYVYRLEPPLDELVWDAPTSSYSVRQ 858
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 323 GEETSYCFKEKSRSVLRDWYLHNP 394
GE+ Y K+ VLRDW L P
Sbjct: 73 GEKLVYVLYPKNAQVLRDWDLWGP 96
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 477 RFLNQFDTCTVVSPVVSASSLFSRGEGYGLWRY 379
RF N+F TC +VS V+ + + L RY
Sbjct: 54 RFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRY 86
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 477 RFLNQFDTCTVVSPVVSASSLFSRGEGYGLWRY 379
RF N+F TC +VS V+ + + L RY
Sbjct: 54 RFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRY 86
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 384 STTRILRHEKRESWPKRP 437
S +R LRHEKR PK P
Sbjct: 398 SHSRTLRHEKRHVSPKSP 415
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 7.8
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Frame = +3
Query: 291 VNSPSPERYGTERRPLTVLRKSPDPSSATGISTTRILRH-----EKRESWPKRPD*PQY 452
VNS SP+R G + + SP +S T LRH E P + D P Y
Sbjct: 144 VNSLSPKRRGISLMSIDANKLSPKKTSPNSGYITSPLRHPILLSETEPGTPTKNDSPAY 202
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 374 DWYLHNPYPSPREKRELAETTGL 442
DW L+NP P P +++ ET L
Sbjct: 50 DWGLYNPNPKPLWQQKAEETREL 72
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +2
Query: 143 KELYRLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPLGAVGKYRVRRKFPLPRTIWD 322
+E +LLE N SA + +K+H+ +R G + KY +++ P + D
Sbjct: 32 EERRKLLEEANSSADENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRD 91
Query: 323 GE 328
+
Sbjct: 92 AQ 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,958
Number of Sequences: 5004
Number of extensions: 52998
Number of successful extensions: 167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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