Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0797
(569 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 39 3e-05
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 37 2e-04
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 35 5e-04
M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee homeobox-... 34 0.001
AB248729-1|BAF02606.1| 43|Apis mellifera distal-less protein. 34 0.001
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 32 0.003
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 31 0.011
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 29 0.025
M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee homeobox-... 29 0.025
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 26 0.30
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 25 0.40
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 24 1.2
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 23 2.8
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 23 2.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.8
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 4.9
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 8.6
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 8.6
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 8.6
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 8.6
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 39.1 bits (87), Expect = 3e-05
Identities = 25/103 (24%), Positives = 47/103 (45%)
Frame = +2
Query: 236 AERLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPSPREK 415
+++ + P GA +P R+ ++ + + L + +N Y + R +
Sbjct: 241 SQQQQAAPQGAASANLPSPLYPWMRSQFERKRGRQTYTRYQTLELEKEFHYNRYLTRRRR 300
Query: 416 RELAETTGLTTVQVSNWFKNRRQRDRQAEHKDSGTGGDKQLDS 544
E+A LT Q+ WF+NRR + ++ E+K GT G D+
Sbjct: 301 IEIAHALCLTERQIKIWFQNRRMKWKK-ENKSKGTPGSGDGDT 342
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 36.7 bits (81), Expect = 2e-04
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +2
Query: 344 FKEKSRSVLRDWYLHNPYPSPREKRELAETTGLTTVQVSNWFKNRRQRDRQA 499
F + + L+ + N Y + R +++L+ GLT Q+ WF+N+R + ++A
Sbjct: 27 FSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIKKA 78
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 35.1 bits (77), Expect = 5e-04
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +2
Query: 305 PRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPSPREKRELAETTGLTTVQVSNWFKNRRQ 484
PRT + GE+ + +E + N Y + R +++L+ GL Q+ WF+N+R
Sbjct: 23 PRTAFSGEQLARLKRE---------FAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRA 73
Query: 485 RDRQA 499
+ ++A
Sbjct: 74 KIKKA 78
>M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H90. ).
Length = 74
Score = 33.9 bits (74), Expect = 0.001
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 386 HNPYPSPREKRELAETTGLTTVQVSNWFKNRRQRDRQAEHKDSGT 520
+N Y + R + E+A LT Q+ WF+NRR + ++ + +GT
Sbjct: 29 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENARATGT 73
>AB248729-1|BAF02606.1| 43|Apis mellifera distal-less protein.
Length = 43
Score = 33.9 bits (74), Expect = 0.001
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 410 EKRELAETTGLTTVQVSNWFKNRRQR 487
E+ ELA + GLT QV WF+NRR +
Sbjct: 10 ERAELAASLGLTQTQVKIWFQNRRSK 35
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 32.3 bits (70), Expect = 0.003
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 389 NPYPSPREKRELAETTGLTTVQVSNWFKNRRQRDRQAEHK 508
N Y + R + E+A LT Q+ WF+NRR + ++ EHK
Sbjct: 30 NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK-EHK 68
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 30.7 bits (66), Expect = 0.011
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 386 HNPYPSPREKRELAETTGLTTVQVSNWFKNRRQR 487
+N Y + R + E+A LT Q+ WF+NRR +
Sbjct: 29 YNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 62
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 29.5 bits (63), Expect = 0.025
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 317 WDGEETSYC---FKEKSRSVLRDWYLHNPYPSPREKRELAETTGLTTVQVSNWFKNRRQR 487
WD E F + L + + Y S E+ LA + LT QV WF+NRR +
Sbjct: 3 WDRREARRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 62
>M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H17. ).
Length = 79
Score = 29.5 bits (63), Expect = 0.025
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 395 YPSPREKRELAETTGLTTVQVSNWFKNRRQRDRQAEHKD 511
Y + E+ E + + LT QV WF+NRR + ++ + +
Sbjct: 33 YLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAE 71
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 25.8 bits (54), Expect = 0.30
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 450 TVVSPVVSASSLFSRGEGYGLWRYQSRRTDLDFSL 346
TV++ S S++ S+G G WR + R++ D+ +
Sbjct: 1207 TVLTLAWSESNVESKGRLLGFWRVEMPRSNADYEV 1241
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 25.4 bits (53), Expect = 0.40
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +2
Query: 425 AETTGLTTVQVSNWFKNRRQRDRQAEHKDSGTGGDKQLDSSTDDDSER 568
A TTG TT+ K R+ A+ +D +++ D ++E+
Sbjct: 253 AMTTGTTTIPTRRLRKRRQNDGEGADDRDDDEENEEEEDGRGQSEAEK 300
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 23.8 bits (49), Expect = 1.2
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +2
Query: 326 EETSYCFKEKSRSVLRDWYLHNPYPSPREKRELAETTGLTTVQVSNWFKNRRQRDRQAEH 505
E TS+ K SRS R+ Y + RE R+ ET+ F++RR+R+R E
Sbjct: 265 ERTSH--KRYSRSRERE---QKSYKNEREYRKYRETS-------KERFRDRRERERSKES 312
Query: 506 KDSGTGGDKQLDSSTD 553
K + +K + ++ +
Sbjct: 313 KIISSLSNKTIHNNNN 328
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 22.6 bits (46), Expect = 2.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 39 GWGGSSGRCRHASV 80
GWGG +G C SV
Sbjct: 613 GWGGKAGPCAIKSV 626
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 22.6 bits (46), Expect = 2.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 39 GWGGSSGRCRHASV 80
GWGG +G C SV
Sbjct: 651 GWGGKAGPCAIKSV 664
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.8
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 315 YGTERRPLTVLRKSPDPS-SATGISTTRILRHEKRESW 425
Y RP T+L + DP S+ I+T I+ H W
Sbjct: 84 YNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.8 bits (44), Expect = 4.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +3
Query: 144 RSCTGCWSRTTSAHTTTQSCRVYG*KLTI 230
R CW + T H + C V +TI
Sbjct: 116 RDSLSCWLQMTKHHNFIKVCSVNDVNMTI 144
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 61 RPEEPPQPIYVAGLLKDLA 5
R +EPP PI VA + +A
Sbjct: 448 RKKEPPHPIRVAKTIDVIA 466
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 61 RPEEPPQPIYVAGLLKDLA 5
R +EPP PI VA + +A
Sbjct: 434 RKKEPPHPIRVAKTIDVIA 452
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 61 RPEEPPQPIYVAGLLKDLA 5
R +EPP PI VA + +A
Sbjct: 468 RKKEPPHPIRVAKTIDVIA 486
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 61 RPEEPPQPIYVAGLLKDLA 5
R +EPP PI VA + +A
Sbjct: 417 RKKEPPHPIRVAKTIDVIA 435
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,960
Number of Sequences: 438
Number of extensions: 4780
Number of successful extensions: 21
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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