Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0792
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 314 6e-87
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 314 6e-87
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 314 6e-87
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 89 3e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 72 7e-14
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 36 0.004
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.5
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch... 27 2.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.0
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 2.6
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 3.5
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 26 4.6
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 4.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 6.1
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 6.1
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 6.1
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 6.1
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 314 bits (771), Expect = 6e-87
Identities = 136/192 (70%), Positives = 167/192 (86%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
+ +AR+EEI KE S++IKK+G+NP TV FVP+SG+ GDNM+EP+ MPW++GW + K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
V+GK L+EA+D+I+PP+RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGM+V FA
Sbjct: 220 VVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFA 279
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
PA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN PP G + FT
Sbjct: 280 PAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFT 339
Query: 543 AQVIVLNHPGQI 578
AQVI+LNHPGQI
Sbjct: 340 AQVIILNHPGQI 351
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 314 bits (771), Expect = 6e-87
Identities = 136/192 (70%), Positives = 167/192 (86%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
+ +AR+EEI KE S++IKK+G+NP TV FVP+SG+ GDNM+EP+ MPW++GW + K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
V+GK L+EA+D+I+PP+RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGM+V FA
Sbjct: 220 VVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFA 279
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
PA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN PP G + FT
Sbjct: 280 PAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFT 339
Query: 543 AQVIVLNHPGQI 578
AQVI+LNHPGQI
Sbjct: 340 AQVIILNHPGQI 351
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 314 bits (771), Expect = 6e-87
Identities = 136/192 (70%), Positives = 167/192 (86%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
+ +AR+EEI KE S++IKK+G+NP TV FVP+SG+ GDNM+EP+ MPW++GW + K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
V+GK L+EA+D+I+PP+RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGM+V FA
Sbjct: 220 VVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFA 279
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
PA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN PP G + FT
Sbjct: 280 PAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFT 339
Query: 543 AQVIVLNHPGQI 578
AQVI+LNHPGQI
Sbjct: 340 AQVIILNHPGQI 351
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 89.4 bits (212), Expect = 3e-19
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 4/196 (2%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSY-IKKIGYNPATVAFVPISGWHGDNMLEP--SDKMPWFKGWTIDR 173
+ E R++EIK VS + IK +G+ + V FVPIS G N+++ SD W+KG T
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPT--- 386
Query: 174 KDGKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVV 353
L+ ALD + PP +P KPLRL + DVY+ TV GRVE G ++ V+
Sbjct: 387 ---------LLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVL 436
Query: 354 VFAPAAITTEVKSVEMHHEALQE-AMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGA 530
+ VK+V + + A+ GD V + ++ V +LR G + + +N P +
Sbjct: 437 YDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYEN-PVRRV 495
Query: 531 SDFTAQVIVLNHPGQI 578
F A++ + G I
Sbjct: 496 RSFVAEIQTFDIHGPI 511
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 71.7 bits (168), Expect = 7e-14
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Frame = +3
Query: 201 LIEALDA-IQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPG--MVVVFAPAA 371
L+EA+D+ I P R T+ P + ++DV+ I G GTV GRVE G LK G + +V +
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
Query: 372 ITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPP 521
+ T V +EM + L A+ GDN G ++++ ++L+RG + P
Sbjct: 294 LKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQPGTVAP 343
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 35.9 bits (79), Expect = 0.004
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Frame = +3
Query: 141 MPWFKGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRV 320
+P K + K GK + L E + I PP PLR L D + G + + R+
Sbjct: 206 IPMSKPILVSSKTGKNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRI 265
Query: 321 ETGILKPGMVVVFAPAAITTEVKSVEMHHEALQEA--MPGDNVGF---NVKNV 464
G +K G V+ EV+ V + + + E + VG+ N+KN+
Sbjct: 266 MEGFIKKGGKVMSVNTGRKYEVQQVGIMYPDMTEVSRLRAGQVGYIIWNMKNI 318
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +3
Query: 33 KEVS---SYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCL 203
KEVS SYI +P T +G+ +N+++P P FKG ++ + K+ + L
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKGPNYNKFNAKLYLESL 218
Query: 204 IEALDAIQPPS 236
E P S
Sbjct: 219 REKRRTYTPLS 229
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -3
Query: 487 PRRSSFTDTFLTLKPTLSPGIASCSA-----SWCISTDLTSVVIAAGANTTTIPGLRIPV 323
P +S TDT + PT S + ++ S +ST +T V ++T+IP
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 268
Query: 322 STRPTGTVPIP 290
S+ T + P+P
Sbjct: 269 SSTDTNSSPLP 279
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -3
Query: 442 TLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 290
T S I S +ST +T V ++T+IP S+ T + P+P
Sbjct: 173 TTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP 223
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -3
Query: 442 TLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 290
T S I S +ST +T V ++T+IP S+ T + P+P
Sbjct: 116 TTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLP 166
Score = 25.4 bits (53), Expect = 6.1
Identities = 27/108 (25%), Positives = 41/108 (37%)
Frame = -3
Query: 502 SPAT*PRRSSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPV 323
+P P +S T T T S G +S ++ TS I N+TT +P
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPP 361
Query: 322 STRPTGTVPIPPILYTS*RGKRRGFSVGRDGGCIASSASMRHFPSTLP 179
++ + + P PP TS G + C S++ ST P
Sbjct: 362 TSTSSTSTP-PPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTP 408
>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 389 LNFGGNS----CRSKYHNHTRLENSCLHSSNWHRSD-SSYLVHVLKRQAKGLL 246
+N GGNS C K +T +N C+ +WH + S +L+ +L G L
Sbjct: 1 MNHGGNSTMRHCSMKMTFNTDYDNLCIVFKSWHIGNLSQFLLSLLAIAILGYL 53
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 2.0
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -3
Query: 454 TLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYT 275
T+ + + ASC S + + +SVV+ + T T+ VST TGTV +P YT
Sbjct: 65 TIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVP---YT 119
Query: 274 S 272
S
Sbjct: 120 S 120
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.6
Identities = 32/110 (29%), Positives = 44/110 (40%)
Frame = -3
Query: 535 SEAPLGGAFLESPAT*PRRSSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGAN 356
S AP + +PAT SF +L T + S +A+ S + A G+N
Sbjct: 183 SNAPPASSTSTTPATGSGGFSFGKP-ASLGSTNNAS-TSTTANSGFSFGKPATTSAPGSN 240
Query: 355 TTTIPGLRIPVSTRPTGTVPIPPILYTS*RGKRRGFSVGRDGGCIASSAS 206
TT P I TGT P + GFS G+ G AS+A+
Sbjct: 241 TTVTPSSSI------TGTNDSKPAASNTGSAPTTGFSFGKPAGQAASTAT 284
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 199 HFPSTLPSLRSMVHPLNQGILSEGSSILSPCQPDIGT 89
HFP T L + N + S SSIL PC P I +
Sbjct: 214 HFPFTQSPL-TKTKSFNDALTSS-SSILKPCMPSIAS 248
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 4.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 251 APSLASSGRVQDRRNRNGASWTSGDRNSQAWYGCGICSGSYY 376
+PS ASS R +R+GAS T+G R + A I +G Y+
Sbjct: 138 SPSGASSARQTPAPSRSGAS-TAGRRRTSATTRGAIQNGVYH 178
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 4.6
Identities = 7/30 (23%), Positives = 19/30 (63%)
Frame = +3
Query: 90 VPISGWHGDNMLEPSDKMPWFKGWTIDRKD 179
+P+ + G ++ P+D++ + K W +D+ +
Sbjct: 445 LPVRMFSGPHLANPNDELVYEKDWKLDKSE 474
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 6.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -3
Query: 478 SSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTV 299
SS T+T + SP ++S S LTSV I + + T + I ST + T+
Sbjct: 194 SSSTNTVILTTSVNSPAVSS-------SETLTSVSITSTESAYTSSSVDIAASTTASSTL 246
Query: 298 PI 293
P+
Sbjct: 247 PV 248
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 184 KSRENVSSRRSMRYSLRHGRLRSPFACLFRTCT 282
K+R + R+M++ H R R+P + +++ CT
Sbjct: 288 KARYLRNKTRNMKWHTIHERQRNPRSAIYQACT 320
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDK--MPWFKGWTI 167
+ E ++ + + S++K+ F+PISG G N+ S + W+K T+
Sbjct: 424 WDENKFINLVNSIQSFLKESCGIIEKSKFIPISGLKGTNLTSISQEKLSQWYKSDTL 480
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 211 ASMRHFPSTLPSLRSMVHPLNQGILSEGS 125
AS F L ++VHP+ Q + SEG+
Sbjct: 617 ASKEEFEDQRQKLDAVVHPITQKLYSEGA 645
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,855
Number of Sequences: 5004
Number of extensions: 50305
Number of successful extensions: 220
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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