Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0792
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 235 1e-62
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 37 0.010
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 35 0.042
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 33 0.13
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 31 0.90
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 29 2.7
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5) 29 3.6
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3) 27 8.4
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 235 bits (576), Expect = 1e-62
Identities = 111/160 (69%), Positives = 128/160 (80%), Gaps = 6/160 (3%)
Frame = +3
Query: 117 NMLEPSDKMPWFKGWTIDR------KDGKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDV 278
NM+ + +MPWFK WTI+R K+ G L E LD+I PPSRP+ PLRLPLQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 279 YKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEALQEAMPGDNVGFNVK 458
YKIGGIGTVPVGRVETG+LKPG VV F+P+ ITTEVKSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVK 172
Query: 459 NVSVKELRRGYVAGDSKNAPPKGASDFTAQVIVLNHPGQI 578
NVSVK+++RG VAGD KN PPK FTAQVIV+NHPG+I
Sbjct: 173 NVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEI 212
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPAT 80
++E RYEEIK +++ ++KK+G+NP T
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNPKT 324
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +3
Query: 231 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHE 410
P R T L + + I G GT+ G + +G + V +T +VKS++M +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163
Query: 411 ALQEAMPGD 437
+ +A GD
Sbjct: 164 PVDKASQGD 172
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +3
Query: 246 EKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAI----TTEVKSVEMHHEA 413
E+P + D Y + G+GTV G GI++ ++ P + ++S+
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMP 161
Query: 414 LQEAMPGDNVGFNVK 458
++E G F++K
Sbjct: 162 VKEVRGGQTASFSLK 176
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 100 LAGTVTICWSLLIRCLGSRGGPSIARTAKSRENVSSRRSMRYSLRHGRLRSPFACLF 270
L +T CWS + C+ GPS KS EN R + +G ++ C F
Sbjct: 263 LLSFITSCWSYSVICMSCAVGPSCNPVEKSCENGEGRCVTAWGTVNGVMQYYRGCAF 319
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 30.7 bits (66), Expect = 0.90
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGY--NPATVAFVPISGWHGDNMLEPSDKMP 146
YHEAR EI ++S ++GY NPAT F+ H D E SD +P
Sbjct: 694 YHEARDCEILTDISRIAGRVGYSANPATNCFI-----H-DECSECSDTLP 737
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 397 STDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS 272
+TD+TS+ I +TT I + + ++T T I I+ TS
Sbjct: 22 TTDITSITIITTTSTTDITSITMIITTSTTDITSITMIITTS 63
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 397 STDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS 272
+TD+TS+ + +TT I + + ++T T + I I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 397 STDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS 272
+TD+TS+ + +TT I + I +T T I I+ TS
Sbjct: 8 TTDITSITMIITTSTTDITSITIITTTSTTDITSITMIITTS 49
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 397 STDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS 272
+TD+TS+ + +TT I + + ++T T I I+ TS
Sbjct: 149 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTS 190
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 397 STDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS 272
+TD+TS+ + +TT I + + ++T T I I+ TS
Sbjct: 163 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTS 204
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 397 STDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS 272
+TD+TS+ + +TT I + + ++T T I I+ TS
Sbjct: 177 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTS 218
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 9 EARYEEIKKEVSSYIKKIGYNPAT-VAFVPISGWHGDNMLE 128
EA+ + K +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1073 EAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5)
Length = 87
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 388 LTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPP 287
+T++ I TT+P +P S P+ + P PP
Sbjct: 23 ITTITITTITTNTTLPSTSLPPSPSPSPSPPSPP 56
>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 183 CRPCDRWSTP*TKASYQKAPAYCHRASQISVRTP 82
C PC++ K P+ CHR + + V TP
Sbjct: 298 CPPCEQTCGRTLNCKNHKCPSQCHRGTHLIVITP 331
>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 366 AAITTEVKSVEMHHEALQ-EAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPP 521
A+ TT A+Q E PG ++G + + VKEL++ AG + PP
Sbjct: 49 ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101
>SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3)
Length = 272
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 336 KPGMVVVFAPAAITTEVKSVEMHHEALQ-EAMPGDNVGFNVKNVSVKELRRGYVAGDSKN 512
K + V A TT + + A+Q E PG ++G + KEL+ AG +
Sbjct: 86 KKAVPVASEDAIATTSITGSHLAMTAMQSEEEPGASMGHKTERKKAKELKEMKKAGLTLR 145
Query: 513 APP 521
PP
Sbjct: 146 PPP 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,015,457
Number of Sequences: 59808
Number of extensions: 405294
Number of successful extensions: 3103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3102
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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