Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0792
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 307 3e-84
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 307 3e-84
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 307 3e-84
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 79 3e-15
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 59 3e-09
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 59 3e-09
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 55 4e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 55 4e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 55 4e-08
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 54 1e-07
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 52 2e-07
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 52 2e-07
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 52 2e-07
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 39 0.003
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.15
AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical ... 31 0.59
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 30 1.0
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 30 1.0
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 30 1.4
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 29 1.8
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 29 1.8
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 1.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 1.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 1.8
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 29 2.4
U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine rece... 29 2.4
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical pr... 29 3.2
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 4.2
Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF068710-1|AAC17772.1| 419|Caenorhabditis elegans Hypothetical ... 27 7.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 9.6
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 27 9.6
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 27 9.6
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 27 9.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 307 bits (754), Expect = 3e-84
Identities = 140/192 (72%), Positives = 160/192 (83%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
+ EAR+ EI EVS +IKKIGYNP V FVPISG++GDNMLE S MPWFKGW ++RK+G
Sbjct: 128 FSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEG 187
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
GK L+EALD+I PP RPT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVV FA
Sbjct: 188 NASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFA 247
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK++RRG V DSK P K A F
Sbjct: 248 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 307
Query: 543 AQVIVLNHPGQI 578
AQVI++NHPGQI
Sbjct: 308 AQVIIMNHPGQI 319
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 307 bits (754), Expect = 3e-84
Identities = 140/192 (72%), Positives = 160/192 (83%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
+ EAR+ EI EVS +IKKIGYNP V FVPISG++GDNMLE S MPWFKGW ++RK+G
Sbjct: 162 FSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEG 221
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
GK L+EALD+I PP RPT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVV FA
Sbjct: 222 NASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFA 281
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK++RRG V DSK P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 543 AQVIVLNHPGQI 578
AQVI++NHPGQI
Sbjct: 342 AQVIIMNHPGQI 353
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 307 bits (754), Expect = 3e-84
Identities = 140/192 (72%), Positives = 160/192 (83%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
+ EAR+ EI EVS +IKKIGYNP V FVPISG++GDNMLE S MPWFKGW ++RK+G
Sbjct: 162 FSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEG 221
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
GK L+EALD+I PP RPT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVV FA
Sbjct: 222 NASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFA 281
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK++RRG V DSK P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 543 AQVIVLNHPGQI 578
AQVI++NHPGQI
Sbjct: 342 AQVIIMNHPGQI 353
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 78.6 bits (185), Expect = 3e-15
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 2/190 (1%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPAT-VAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKD 179
+ E R++EI+ +++ +++K+G+NP T + +VP SG G + K +
Sbjct: 264 WEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG----------AFIKDRPTGSEG 313
Query: 180 GKVEGKCLIEALDAIQPP-SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVV 356
G C IE +D + P R P+R + + Y +GTV +G++E+G ++ G +V
Sbjct: 314 NWYSGPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLV 371
Query: 357 FAPAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASD 536
P +V + + + GDN+ F +K + EL+ G++ S ++ K
Sbjct: 372 VMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRV 430
Query: 537 FTAQVIVLNH 566
F A+V+VL H
Sbjct: 431 FDAEVLVLEH 440
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 58.8 bits (136), Expect = 3e-09
Identities = 36/148 (24%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYI-KKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKD 179
+ + R++EIK +S ++ ++ G++ FVP+SG+ G+N+++ + + W+
Sbjct: 323 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIKRME-LDWY--------- 370
Query: 180 GKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVF 359
+G CL+E +D+ P P++ PLR+ + DV K+ V G++E+G ++ V
Sbjct: 371 ---DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYI 427
Query: 360 APAAITTEVKSVEMHHEALQEAMPGDNV 443
+ VK +++ + GD +
Sbjct: 428 MSSVTAATVKEC-ANNDGSRHCFAGDYI 454
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 58.8 bits (136), Expect = 3e-09
Identities = 36/148 (24%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYI-KKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKD 179
+ + R++EIK +S ++ ++ G++ FVP+SG+ G+N+++ + + W+
Sbjct: 341 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIKRME-LDWY--------- 388
Query: 180 GKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVF 359
+G CL+E +D+ P P++ PLR+ + DV K+ V G++E+G ++ V
Sbjct: 389 ---DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYI 445
Query: 360 APAAITTEVKSVEMHHEALQEAMPGDNV 443
+ VK +++ + GD +
Sbjct: 446 MSSVTAATVKEC-ANNDGSRHCFAGDYI 472
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 54.8 bits (126), Expect = 4e-08
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Frame = +3
Query: 180 GKVEGKCLIEALDA--IQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPG-MV 350
G+ K L+E LD + P + E+P+ + VY I G GTV G++E GILK G +
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 284
Query: 351 VVFAPAAITTEVKSV----EMHHEALQEAMPGDNVGFNVKNVSVKELRRGYV 494
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 285 EIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 54.8 bits (126), Expect = 4e-08
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Frame = +3
Query: 180 GKVEGKCLIEALDA--IQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPG-MV 350
G+ K L+E LD + P + E+P+ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 285
Query: 351 VVFAPAAITTEVKSV----EMHHEALQEAMPGDNVGFNVKNVSVKELRRGYV 494
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 286 EIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 54.8 bits (126), Expect = 4e-08
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Frame = +3
Query: 180 GKVEGKCLIEALDA--IQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPG-MV 350
G+ K L+E LD + P + E+P+ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 285
Query: 351 VVFAPAAITTEVKSV----EMHHEALQEAMPGDNVGFNVKNVSVKELRRGYV 494
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 286 EIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Frame = +3
Query: 252 PLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAA----ITTEVKSVEMHHEALQ 419
P + D+Y + G+GT+ G + +G ++ +++ P + + +KS+ +
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVG 431
Query: 420 EAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFTAQVIVLNHPGQI 578
G + F +K + K++R+G V D K P + F A+++VL+HP I
Sbjct: 432 IVKCGQSASFALKKIPKKDVRKGMVLVDPK-VKPVASMVFEAEILVLHHPTTI 483
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 52.4 bits (120), Expect = 2e-07
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = +3
Query: 135 DKMPWFKGWTIDRKDGKVEGKC---LIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTV 305
D P +G + +G+ + C LI+ALD++ P R + +P+ I G GTV
Sbjct: 198 DATPVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTV 256
Query: 306 PVGRVETGILKPGMVVVFA--PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKEL 479
VG +E G+LK G V + T +++ ++++E GD+ G + V +
Sbjct: 257 IVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTV 316
Query: 480 RRGYVAG 500
+RG AG
Sbjct: 317 KRGMWAG 323
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Frame = +3
Query: 252 PLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAA----ITTEVKSVEMHHEALQ 419
P + D+Y + G+GT+ G + +G ++ +++ P + + +KS+ +
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVG 432
Query: 420 EAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFTAQVIVLNHPGQI 578
G + F +K + K++R+G V D K P + F A+++VL+HP I
Sbjct: 433 IVKCGQSASFALKKIPKKDVRQGMVLVDPK-VKPVASMVFEAEILVLHHPTTI 484
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 52.4 bits (120), Expect = 2e-07
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = +3
Query: 135 DKMPWFKGWTIDRKDGKVEGKC---LIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTV 305
D P +G + +G+ + C LI+ALD++ P R + +P+ I G GTV
Sbjct: 198 DATPVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTV 256
Query: 306 PVGRVETGILKPGMVVVFA--PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKEL 479
VG +E G+LK G V + T +++ ++++E GD+ G + V +
Sbjct: 257 IVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTV 316
Query: 480 RRGYVAG 500
+RG AG
Sbjct: 317 KRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 38.7 bits (86), Expect = 0.003
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = +3
Query: 252 PLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITT----EVKSVEMHHEALQ 419
P ++++Y + +G V G + G L G V+ P T V S+ +A+
Sbjct: 402 PAFFTIEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVG 461
Query: 420 EAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFTAQVIVLNH 566
PG+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 462 CVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 33.1 bits (72), Expect = 0.15
Identities = 31/90 (34%), Positives = 35/90 (38%)
Frame = +1
Query: 67 TIPLLWRSYRYLAGTVTICWSLLIRCLGSRGGPSIARTAKSRENVSSRRSMRYSLRHGRL 246
TI L+ + T T C C GSR G AR E SSR S + +L
Sbjct: 166 TIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQL 225
Query: 247 RSPFACLFRTCTR*EESERCQLDEWRQEFS 336
R CTR EE E Q D R E S
Sbjct: 226 TDHSVFHSRMCTRSEELEPSQSDVLRPESS 255
>AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical
protein Y106G6G.4 protein.
Length = 315
Score = 31.1 bits (67), Expect = 0.59
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = -3
Query: 538 KSEAPLGGAFLESPAT*PRRSSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGA 359
KS+A GG+ + T P ++ T TL+P L+ +S +T +TS +
Sbjct: 150 KSDALTGGSNTTNTTTAPPATNSTQIISTLRPPLNRSTSSTDVKENGTTHVTSANL---T 206
Query: 358 NTTTIPGLRIPVSTRPTGTVPIP 290
TT IP + + T T P P
Sbjct: 207 GTTKIPVIVTTIGFTITSTDPPP 229
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -3
Query: 478 SSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPT-GT 302
S+FT T T T +PG + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 301 VPIPPILYTS*RGKRRG 251
PI+ T+ + RG
Sbjct: 2074 STTQPIITTTKGAEGRG 2090
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -3
Query: 478 SSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPT-GT 302
S+FT T T T +PG + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 301 VPIPPILYTS*RGKRRG 251
PI+ T+ + RG
Sbjct: 2074 STTQPIITTTKGAEGRG 2090
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -3
Query: 478 SSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPT-GT 302
S+FT T T T +PG + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 301 VPIPPILYTS*RGKRRG 251
PI+ T+ + RG
Sbjct: 2074 STTQPIITTTKGAEGRG 2090
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +3
Query: 231 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHE 410
P R E + + + I G GTV G V G+L+ + F VK++E +
Sbjct: 194 PKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQ 253
Query: 411 ALQEAMPGDNVGFNV 455
+ + G F V
Sbjct: 254 RVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +3
Query: 231 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHE 410
P R E + + + I G GTV G V G+L+ + F VK++E +
Sbjct: 153 PKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQ 212
Query: 411 ALQEAMPGDNVGFNV 455
+ + G F V
Sbjct: 213 RVGQVAAGARAAFLV 227
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 390 SVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNA 515
+++M + + A GD+ G+ + N+ ++L RG+ D + A
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDEREA 309
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 390 SVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNA 515
+++M + + A GD+ G+ + N+ ++L RG+ D + A
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDEREA 309
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 430 GIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 290
G C A+ C TS I A + I I STRP VP+P
Sbjct: 3858 GFLKCRATNCAGQVETSCEIVAADEISVISDSSITSSTRPHFVVPLP 3904
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 430 GIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 290
G C A+ C TS I A + I I STRP VP+P
Sbjct: 3858 GFLKCRATNCAGQVETSCEIVAADEISVISDSSITSSTRPHFVVPLP 3904
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 430 GIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 290
G C A+ C TS I A + I I STRP VP+P
Sbjct: 3858 GFLKCRATNCAGQVETSCEIVAADEISVISDSSITSSTRPHFVVPLP 3904
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 398 LNRLNFGGNSCRSKYHNHTRLENSCLHSSNWHRSDSSYLVHVLKRQAKGLL 246
LN + R ++HN R S L + S+S + +L+R+ KG++
Sbjct: 459 LNFMTGSNEQLRDRFHNRNRAVYSVLDQLQVNASNSIIVKRILRRKYKGIV 509
>U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 11 protein.
Length = 350
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 21 EEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNM 122
E+ K+ +S+ +KIG+N ATV P+ G M
Sbjct: 284 EKWKRHLSATWRKIGFNSATVQVAPLCDTFGSEM 317
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 247 SVGRDGGCIASSASMRHFPSTLPSLRSMVHP 155
S G +GG I+ ++F S LPS VHP
Sbjct: 600 SGGEEGGSISPDLGHKNFESPLPSSTENVHP 630
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 247 SVGRDGGCIASSASMRHFPSTLPSLRSMVHP 155
S G +GG I+ ++F S LPS VHP
Sbjct: 600 SGGEEGGSISPDLGHKNFESPLPSSTENVHP 630
>Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical
protein T23B5.3c protein.
Length = 249
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 247 SVGRDGGCIASSASMRHFPSTLPSLRSMVHP 155
S G +GG I+ ++F S LPS VHP
Sbjct: 33 SGGEEGGSISPDLGHKNFESPLPSSTENVHP 63
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 496 AT*PRRSSFTDTFLTLKPTLSPGIASCSASWCISTDLTS 380
+T P S+F T T+ T++PG C ++ ++ +LTS
Sbjct: 548 STVPVTSTFASTTTTVPITVAPGQCYCQSNVAVAFELTS 586
>Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical
protein ZK930.7 protein.
Length = 167
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 209 GARCDTASVTAD*EAPSLASSGRVQDRRNRNGASWTSGDRNSQAWY 346
G+RC+++S+ + ++ASSG V N S S N + Y
Sbjct: 16 GSRCESSSILTQNQPTTIASSGFVMSNPNVKSPSLPSSATNWNSEY 61
>Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical
protein H13N06.6 protein.
Length = 585
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 72 PATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKV 188
P T F + W N+++ DK W +D+K GKV
Sbjct: 132 PGTTQFYIAASWGSTNLVDIRDKR-----WVVDKKFGKV 165
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 27.5 bits (58), Expect = 7.3
Identities = 25/95 (26%), Positives = 35/95 (36%)
Frame = -3
Query: 502 SPAT*PRRSSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPV 323
+P T S+ T+T T PT + A + + +T + I TTT
Sbjct: 293 TPTTTTTESTTTETTSTTTPTTTT-TAPTTTTTASTTTFKTTTITTTTQTTT--PTTTAT 349
Query: 322 STRPTGTVPIPPILYTS*RGKRRGFSVGRDGGCIA 218
+T+PT T P K F V GC A
Sbjct: 350 TTKPTTTTPTTTRTPVDCSAKCDPFWVSYSDGCYA 384
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 27.5 bits (58), Expect = 7.3
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Frame = -3
Query: 559 STIT*AVKSEAPLGGAFLESPAT*PRRSSFTDTFLTLKPTLSPGIASCS-ASWCISTDLT 383
ST T A+ P + ++ P + T +S ++ S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 382 SVVIAAGANTTTIPGLR--IPVSTRPTGTVPIPPILY 278
V + +T+P + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>AF068710-1|AAC17772.1| 419|Caenorhabditis elegans Hypothetical
protein T06A1.1 protein.
Length = 419
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 122 HIVTVPARYRYERHSSGIVTNFLN 51
H+++VP R+ Y RH + N LN
Sbjct: 321 HVMSVPKRFAYVRHYRSVDNNKLN 344
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -3
Query: 433 PGIASCSASWCISTDL-TSVVIAAGANTTTIPGLRIPVSTRPTGTVP--IPPILYT 275
P S CIS TS + T+P +++P+ T P T P +PP+ T
Sbjct: 322 PAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQIT 377
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -3
Query: 433 PGIASCSASWCISTDL-TSVVIAAGANTTTIPGLRIPVSTRPTGTVP--IPPILYT 275
P S CIS TS + T+P +++P+ T P T P +PP+ T
Sbjct: 419 PAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQIT 474
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 232 GGCIASSASMRHFPSTLPSLRSMVHPLNQ 146
G IA++A+ +HF + P HP+NQ
Sbjct: 131 GAAIAAAAAKQHFENMAPLNMRAGHPMNQ 159
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 232 GGCIASSASMRHFPSTLPSLRSMVHPLNQ 146
G IA++A+ +HF + P HP+NQ
Sbjct: 130 GAAIAAAAAKQHFENMAPLNMRAGHPMNQ 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,820
Number of Sequences: 27780
Number of extensions: 297663
Number of successful extensions: 995
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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