Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0792
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   375   e-106
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   363   e-103
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   332   1e-93
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   163   8e-43
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   129   2e-32
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   1.2  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   1.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  375 bits (923), Expect = e-106
 Identities = 172/192 (89%), Positives = 182/192 (94%)
 Frame = +3

Query: 3   YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
           Y E R+EEIKKEVSSYIKKIGYNPA VAFVPISGWHGDNMLE S KMPWFKGWT++RK+G
Sbjct: 162 YSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEG 221

Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
           KVEGKCLIEALDAI PP+RPT+K LRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVV FA
Sbjct: 222 KVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFA 281

Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
           PA +TTEVKSVEMHHEALQEA+PGDNVGFNVKNVSVKELRRGYVAGDSKN PPKGA+DFT
Sbjct: 282 PAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 341

Query: 543 AQVIVLNHPGQI 578
           AQVIVLNHPGQI
Sbjct: 342 AQVIVLNHPGQI 353


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  363 bits (892), Expect = e-103
 Identities = 166/192 (86%), Positives = 179/192 (93%)
 Frame = +3

Query: 3   YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
           Y EAR+EEIKKEVSSYIKKIGYN A+VAFVPISGWHGDNMLEPS K PW+KGW ++RKDG
Sbjct: 162 YSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDG 221

Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
             +GK LIEALDAI PPSRPT+K LRLPLQDVYKIGGIGTVPVGRVETGILKPGM+V FA
Sbjct: 222 NADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFA 281

Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
           PAA+TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GA+DFT
Sbjct: 282 PAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFT 341

Query: 543 AQVIVLNHPGQI 578
           AQVIVLNHPGQI
Sbjct: 342 AQVIVLNHPGQI 353



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 439 LSPGIASCSASWCISTDLTSVVIAAGANTTTIPG 338
           L PG+    A   ++T++ SV +   A T  +PG
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPG 305


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  332 bits (817), Expect = 1e-93
 Identities = 152/170 (89%), Positives = 161/170 (94%)
 Frame = +3

Query: 3   YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
           Y E R+EEIKKEVSSYIKKIGYNPA VAFVPISGWHGDNMLE S KMPWFKGWT++RK+G
Sbjct: 105 YSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEG 164

Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
           KVEGKCLIEALDAI PP+RPT+K LRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVV FA
Sbjct: 165 KVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFA 224

Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKN 512
           PA +TTEVKSVEMHHEALQEA+PGDNVGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 225 PAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  163 bits (397), Expect = 8e-43
 Identities = 71/83 (85%), Positives = 77/83 (92%)
 Frame = +3

Query: 3   YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
           Y E R+EEIKKEVSSYIKKIGYNPA VAFVPISGWHGDNMLE S KMPWFKGWT++RK+G
Sbjct: 89  YSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEG 148

Query: 183 KVEGKCLIEALDAIQPPSRPTEK 251
           KVEGKCLIEALDAI PP+RPT+K
Sbjct: 149 KVEGKCLIEALDAILPPTRPTDK 171


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  129 bits (311), Expect = 2e-32
 Identities = 58/64 (90%), Positives = 62/64 (96%)
 Frame = +3

Query: 387 KSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFTAQVIVLNH 566
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GA+DFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 567 PGQI 578
           PGQI
Sbjct: 61  PGQI 64


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 110 VPARYRYERHSSGIVTNFLNV 48
           +PA  R++ H +G++T   NV
Sbjct: 76  LPANKRFQAHCAGVITALNNV 96


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 110 VPARYRYERHSSGIVTNFLNV 48
           +PA  R++ H +G++T   NV
Sbjct: 76  LPANKRFQAHCAGVITALNNV 96


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 3   YHEARYEEIKKEVSSYIKKIGYNPATVAFVPI 98
           Y+ + Y       ++Y KK+ YN   +  +P+
Sbjct: 89  YNYSNYNNYNNNYNNYNKKLYYNINYIEQIPV 120


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 465 SVKELRRGYVAGDSKNAPPKGASDFTAQVIVLNHPG 572
           S ++LR  ++A +     PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 312 GRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 416
           G +E   + P M +V+A + I     S+E    A+
Sbjct: 143 GHIEDDYVGPAMELVYAWSTIDYTYDSIEARDSAI 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,619
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)