Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0792
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 279 1e-75
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 279 1e-75
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 279 1e-75
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 279 1e-75
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 85 2e-17
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 82 3e-16
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 72 3e-13
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 70 1e-12
At2g31060.1 68415.m03790 elongation factor family protein contai... 33 0.10
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.18
At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ... 30 1.3
At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 29 1.7
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 2.2
At1g23230.1 68414.m02906 expressed protein 29 3.0
At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A... 28 3.9
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 28 3.9
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 28 3.9
At5g40360.1 68418.m04896 myb family transcription factor (MYB115... 28 5.2
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ... 28 5.2
At1g01060.2 68414.m00007 myb family transcription factor contain... 28 5.2
At1g01060.1 68414.m00006 myb family transcription factor contain... 28 5.2
At5g62240.1 68418.m07815 expressed protein various predicted pro... 27 6.8
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 27 6.8
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 6.8
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 27 6.8
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 9.0
At3g60330.1 68416.m06743 ATPase, plasma membrane-type, putative ... 27 9.0
At3g20015.1 68416.m02532 aspartyl protease family protein contai... 27 9.0
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ... 27 9.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 279 bits (684), Expect = 1e-75
Identities = 131/192 (68%), Positives = 158/192 (82%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
Y +ARY+EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E S + W+KG T
Sbjct: 162 YSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPT------ 215
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
L+EALD I P RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVV FA
Sbjct: 216 ------LLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFA 269
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK+ P KGA++FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 543 AQVIVLNHPGQI 578
+QVI++NHPGQI
Sbjct: 330 SQVIIMNHPGQI 341
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 279 bits (684), Expect = 1e-75
Identities = 131/192 (68%), Positives = 158/192 (82%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
Y +ARY+EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E S + W+KG T
Sbjct: 162 YSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPT------ 215
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
L+EALD I P RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVV FA
Sbjct: 216 ------LLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFA 269
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK+ P KGA++FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 543 AQVIVLNHPGQI 578
+QVI++NHPGQI
Sbjct: 330 SQVIIMNHPGQI 341
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 279 bits (684), Expect = 1e-75
Identities = 131/192 (68%), Positives = 158/192 (82%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
Y +ARY+EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E S + W+KG T
Sbjct: 162 YSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPT------ 215
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
L+EALD I P RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVV FA
Sbjct: 216 ------LLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFA 269
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK+ P KGA++FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 543 AQVIVLNHPGQI 578
+QVI++NHPGQI
Sbjct: 330 SQVIIMNHPGQI 341
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 279 bits (684), Expect = 1e-75
Identities = 131/192 (68%), Positives = 158/192 (82%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 182
Y +ARY+EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E S + W+KG T
Sbjct: 162 YSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPT------ 215
Query: 183 KVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA 362
L+EALD I P RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVV FA
Sbjct: 216 ------LLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFA 269
Query: 363 PAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGASDFT 542
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK+ P KGA++FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 543 AQVIVLNHPGQI 578
+QVI++NHPGQI
Sbjct: 330 SQVIIMNHPGQI 341
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 85.4 bits (202), Expect = 2e-17
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPAT-VAFVPISGWHGDNMLEPSDK--MPWFKGWTIDR 173
+ + RY+EI++++ ++K GYN V F+PISG G NM + + PW W+
Sbjct: 256 WSKERYDEIEQKMVPFLKASGYNTKKDVVFLPISGLMGKNMDQRMGQEICPW---WS--- 309
Query: 174 KDGKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVV 353
G E LD+I+ P R P R+P+ D +K +GTV +G+VE+G ++ G +
Sbjct: 310 ------GPSFFEVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREGDSL 361
Query: 354 VFAPAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNAPPKGAS 533
V P +V ++ + ++ A PG+N+ + + +++ G+V N P +
Sbjct: 362 VVMPNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVLSSIVN-PVPAVT 420
Query: 534 DFTAQVIVL 560
+F AQ+ +L
Sbjct: 421 EFVAQLQIL 429
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 81.8 bits (193), Expect = 3e-16
Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
Frame = +3
Query: 3 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLE-PSDKMPWFKGWTIDRKD 179
Y + R++ IK+ V S+++ + +++ ++P+S N++ PSD W
Sbjct: 393 YSKERFDLIKQHVGSFLQSCRFKDSSLTWIPLSAMENQNLVAAPSDNR--LSSW------ 444
Query: 180 GKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPV-GRVETGILKPGMVVV 356
+G CL++A+D+++ P R KPL +P+ D + G V G++E G ++PG V+
Sbjct: 445 --YQGPCLLDAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVM 502
Query: 357 FAPAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYV 494
P+ ++S+E +A A GDNV ++ + ++ G V
Sbjct: 503 VMPSGDQGTIRSLERDSQACTIARAGDNVALALQGIDANQVMAGDV 548
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 71.7 bits (168), Expect = 3e-13
Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Frame = +3
Query: 165 IDRKDGKVEGKC--LIEALDAIQP-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGIL 335
+ R D K K L++A+D P P R TE P L ++DV+ I G GTV GRVE G +
Sbjct: 255 VKRGDNKWVDKIYELMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTV 314
Query: 336 KPGMVVVFAPAAITTE--VKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSK 509
K G V T V VEM + L EA+ GDNVG ++ + +++RG V
Sbjct: 315 KVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 374
Query: 510 NAPPKGASDFTAQVIVL 560
+ P + F A + VL
Sbjct: 375 SITPH--TKFEAIIYVL 389
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 70.1 bits (164), Expect = 1e-12
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Frame = +3
Query: 129 PSDKMPWFKGWTIDRKDG---KVEGKCLIEALDAIQP----PSRPTEKPLRLPLQDVYKI 287
P D +P +G + G ++ + +++ +DA+ P R +KP +P++DV+ I
Sbjct: 219 PGDDIPIIRGSALSALQGTNDEIGRQAILKLMDAVDEYIPDPVRVLDKPFLMPIEDVFSI 278
Query: 288 GGIGTVPVGRVETGILKPGMVVVF-----APAAITTEVKSVEMHHEALQEAMPGDNVGFN 452
G GTV GR+E G++K G V + + V VEM + L GDNVG
Sbjct: 279 QGRGTVATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAGDNVGLL 338
Query: 453 VKNVSVKELRRGYVAGDSKNAPPKGASDFTAQVIVL 560
++ + ++++RG V +K K F A++ VL
Sbjct: 339 LRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVL 372
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 33.5 bits (73), Expect = 0.10
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +3
Query: 153 KGWTIDR--KDGKVEGKCLIEALDAI----QPPSRPTEKPLRLPLQDVYKIGGIGTVPVG 314
+GW KD V+ K + + LDA+ QPP ++P + + + K +G + G
Sbjct: 82 EGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTG 141
Query: 315 RVETGILKPG 344
RV +G+++ G
Sbjct: 142 RVTSGVVRVG 151
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 32.7 bits (71), Expect = 0.18
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = +3
Query: 213 LDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKS 392
++ I PP +E PLR+ L D + G + V G+L G V FA + + EV
Sbjct: 241 IERIPPPPGISESPLRMLLFDSFFNEYKGVICYVSVVDGMLSKGDKVSFAASGQSYEVLD 300
Query: 393 VEMHHEALQEA--MPGDNVGFNVKNV-SVKELRRG 488
V + H L + VG+ V + + KE R G
Sbjct: 301 VGIMHPELTSTGMLLTGQVGYIVTGMRTTKEARIG 335
>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
contains Pfam profiles PF00226: DnaJ domain, PF01556:
DnaJ C terminal region, PF00684: DnaJ central domain (4
repeats)
Length = 517
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 400 ISTDLTSVVIAAGANTTTIPG---LRIPVSTRPTGTVPIP 290
I+ D T ++ A T+ G LRIP T+P TV +P
Sbjct: 339 INIDFTDAILGATTKVETVEGSMDLRIPPGTQPGDTVKLP 378
>At1g27720.1 68414.m03388 transcription initiation factor IID
(TFIID) component TAF4 family protein contains Pfam
profile PF05236: Transcription initiation factor TFIID
component TAF4 family
Length = 682
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 117 NMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEK 251
NM PS+ +P T+ K V K +EAL + PPSR +K
Sbjct: 381 NMPAPSETIPKIANVTVTPKMPSVGQKKPLEALGSSLPPSRKKQK 425
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 559 STIT*AVKSEAPLGGAFLESPAT*PRRSSFTD 464
ST AVK++ G F++S AT R SSFTD
Sbjct: 767 STFLLAVKADVETQGDFVQSLATEVRASSFTD 798
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 466 DTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVP 296
DTFL P+L +++ AS +S + + AG++ T+ + +PVS PT +P
Sbjct: 130 DTFL---PSLLSSVSAAEAS--LSQGVQAAAATAGSSATSSQSV-VPVSVNPTSLLP 180
>At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A
(PP2A) 65 KDa regulatory subunit A identical to protein
phosphatase 2A 65 kDa regulatory subunit (pDF1)
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 184 LPSLRSMVHPLNQGILSEGSSILSPCQPDIGTNATVAGL*PIFL 53
LP ++ + +Q + S +S++ P +G +AT+ L PIFL
Sbjct: 321 LPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFL 364
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 18 YEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNM 122
Y IKK++ ++ +I Y + + + GW G ++
Sbjct: 177 YTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSL 211
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 184 LPSLRSMVHPLNQGILSEGSSILSPCQPDIGTNATVAGL*PIFL 53
LP ++ + +Q + S +S++ P +G +AT+ L PIFL
Sbjct: 321 LPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFL 364
>At5g40360.1 68418.m04896 myb family transcription factor (MYB115)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 359
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 377 GNSCRSKYHNHTRLENSCLHSSNWHRSDSSYLVHVLK 267
G CR ++HNH R + ++W + L+ V K
Sbjct: 193 GKQCRERWHNHLRPN---IKKNDWSEEEDQILIEVHK 226
>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
(SP:Q92797) {Homo sapiens}
Length = 1091
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 208 SMRHFPSTLPSLRSMV-HPLNQGILSEGSSILSPCQP 101
SM+H PST P+L S V P + + S +++ SP P
Sbjct: 253 SMKHLPSTPPTLASSVATPADIVVSSSTNTVHSPTPP 289
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 153 KGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEKP 254
K +T K+ +V+G + +ALD PP RP KP
Sbjct: 67 KFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 153 KGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEKP 254
K +T K+ +V+G + +ALD PP RP KP
Sbjct: 67 KFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At5g62240.1 68418.m07815 expressed protein various predicted
proteins, Arabidopsis thaliana; expression supported by
MPSS
Length = 366
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 325 VSTRPTGTVPIPPILYTS*RGKRRGFSVGRDGGCIASSASMRH 197
VS+R TVP P L T+ R +R V IA+S S RH
Sbjct: 193 VSSRAKLTVPKEPNLRTAERSERHRSKVNTQREQIATSNSKRH 235
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 174 KDGKVEGKCLIEALDAIQPPSRPTEKP 254
K+ + +G + +ALD PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 266 SSGRVQDRRNRNGASWTSGD--RNSQAWY 346
++G+++ +RN +G S T GD +N WY
Sbjct: 2341 ATGKMKKQRNPDGGSSTDGDQNKNGMLWY 2369
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 457 LTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIP 326
L L+P+LS + + + C+S LT VV A TT +P P
Sbjct: 426 LPLEPSLSRTLIEANETGCLSQALT-VVAMLSAETTLLPARSKP 468
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.1 bits (57), Expect = 9.0
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = -3
Query: 565 WLSTIT*AVKSEAPLGGAFLESPAT*PRRSSFTDTFLTLKPTLSPGIAS-CSASWCISTD 389
+L T+T A +GG +SP + P +S T + T PT SP + S +A T
Sbjct: 5 FLLTVTLICIVVAGVGG---QSPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTA 61
Query: 388 LTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS 272
S + + + + P + P + P+P + +S
Sbjct: 62 SASSPVESPKSPAPVSESSPPPTPVPESSPPVPAPMVSS 100
>At3g60330.1 68416.m06743 ATPase, plasma membrane-type, putative /
proton pump, putative similar to P-type
H(+)-transporting ATPase from Nicotiana plumbaginifolia
[SP|Q08435, SP|Q08436], Lycopersicon esculentum
[GI:5901757, SP|P22180], Solanum tuberosum [GI:435003];
contains InterPro accession IPR001757: ATPase, E1-E2
type
Length = 961
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 454 TLKPTLSPGIASCSASWCISTDLTSVVIAAGANT 353
+L T +PG + S S C ++ +VVIA G +T
Sbjct: 188 SLPVTKNPGASVYSGSTCKQGEIEAVVIATGVHT 221
>At3g20015.1 68416.m02532 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 386
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -2
Query: 548 LSSEVGSAFGWCVLRIASNVAATQFFHRYVLDVEAD---VIAGHRLLQCLVVHLNRLNFG 378
LS + G AFG+C++ ++ + F R L V A ++ R V L L G
Sbjct: 183 LSGQTGGAFGYCLVSRGTDSTGSLVFGREALPVGASWVPLVRNPRAPSFYYVGLKGLGVG 242
Query: 377 G 375
G
Sbjct: 243 G 243
>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 333
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -2
Query: 473 FHRYVLDVEADVIAGHRLLQCLVVHL-NRLNFGGNSCRSKYHNHTRLENSCLHSSN 309
FH V A ++ QC HL + + G SCR + +H R C S++
Sbjct: 212 FHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSAS 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,020,410
Number of Sequences: 28952
Number of extensions: 279419
Number of successful extensions: 1066
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -