Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0790
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    27   2.0  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    26   4.7  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    26   6.2  

>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/58 (22%), Positives = 23/58 (39%)
 Frame = -3

Query: 376 IYFFNSDILNMSKLVFASARRGSVVSDCNYYKTRSSESTNTFVTCSEQTYFEQFHKRL 203
           +   N + LN+ K  +  ++         Y   +   S +TFV C    Y + F  +L
Sbjct: 41  VIIINDESLNIEKETYRESKNEKAARGLLYSAVQRELSKSTFVICDALNYIKGFRYQL 98


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 670 GKGVLKAFIPNLESLKD 620
           G  +++AFIPN+ESL +
Sbjct: 576 GSSLIRAFIPNIESLNE 592


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 172 LGPVGLDAFLVSPG*VGEHGLSQEGCELL 86
           LGP GLD  L+SP   GE  ++ +G  +L
Sbjct: 54  LGPRGLDKILISPD--GEITVTNDGATIL 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,320
Number of Sequences: 5004
Number of extensions: 51051
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)