Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0790
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0492 - 3632812-3633189,3633563-3633709,3633906-3633995,363...    30   1.6  
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264...    30   2.1  
08_02_0132 + 12908995-12909437,12909727-12910211,12910417-129109...    29   4.9  
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563     28   6.4  
07_01_0088 + 684471-685154,685271-685834,685938-686222                 28   8.5  
06_03_0964 - 26372924-26372990,26373172-26373686                       28   8.5  
05_01_0494 - 4120996-4121011,4121152-4121483,4122560-4122706,412...    28   8.5  

>01_01_0492 -
           3632812-3633189,3633563-3633709,3633906-3633995,
           3634278-3634331,3636434-3636598,3637252-3637488,
           3637610-3637696,3637846-3638022
          Length = 444

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 161 WPGCLSSFTRIGGRARAQSGGLRIVNRRPSAS 66
           WP  L  FT +GG A     G  +VN RPS S
Sbjct: 339 WPSSL--FTHLGGHANMVQFGGEVVNTRPSGS 368


>05_07_0181 -
           28225396-28225587,28226009-28226068,28226150-28226416,
           28227167-28227232,28228164-28228963,28229565-28229673,
           28230391-28232097
          Length = 1066

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 185 EGKIPGARWPGCLSSFTRIGGRARAQ-SGGLRIVNRRPSASEGDQTAQE-QLLRESIYIL 12
           EG  PGA W G  S   R   +A     GG     +RPS+S   Q+  E ++L ES Y  
Sbjct: 486 EGVDPGALWQGNSSCTVRERFKAAEPFYGGSMPYAQRPSSSGNQQSVFELRMLEESWYRS 545

Query: 11  PD 6
           P+
Sbjct: 546 PE 547


>08_02_0132 +
           12908995-12909437,12909727-12910211,12910417-12910988,
           12911080-12911211,12912184-12912939
          Length = 795

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 684 WQYLEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGH 514
           W+ L+EK    PS P W+H  TS +K+AA     ++   I   P R +  + N+ G+
Sbjct: 143 WESLQEKGHKAPSRP-WTH--TSRVKSAASW---VILGMIARKPVRRRTYMGNNNGY 193


>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
          Length = 571

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 114 PCSPTY-PGETRKASRPTGPRNLTFLRKKI 200
           P SP+Y PG T  AS   GPR +   RK++
Sbjct: 219 PVSPSYTPGHTPVASSRRGPRFIRTARKRV 248


>07_01_0088 + 684471-685154,685271-685834,685938-686222
          Length = 510

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -1

Query: 711 ELNPLEYKIWQYLEEKACSKPSSPIWSHSR-TSLIKAAADIDMDLVRAAIDDWPRRLKAC 535
           EL  +E + +    EK C  P    W      S I    D DM+  R  +DD    ++ C
Sbjct: 409 ELGGIEPQKYIEFGEKYCGFPRYEDWKREMIVSTISRRDDDDMETFRDRVDDDSDHVRLC 468

Query: 534 IQN 526
           +++
Sbjct: 469 LKS 471


>06_03_0964 - 26372924-26372990,26373172-26373686
          Length = 193

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 675 LEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRL 544
           L++ + +KP   +  H R   +K++AD  M   R     WP+ +
Sbjct: 24  LQDCSTTKPLDAMSLHERKRAVKSSADFAMATARGGGARWPKAI 67


>05_01_0494 -
           4120996-4121011,4121152-4121483,4122560-4122706,
           4122818-4122871,4123203-4123367,4125516-4125827,
           4125992-4126078,4126202-4126411
          Length = 440

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 161 WPGCLSSFTRIGGRA-RAQSGGLRIVNRRPSAS 66
           WP  L  F+ +G RA  AQ GG  +VN RPS S
Sbjct: 345 WPSFL--FSHLGARADMAQFGG-EVVNTRPSGS 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,845
Number of Sequences: 37544
Number of extensions: 321601
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)