Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0790
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.057
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6) 33 0.31
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 31 0.71
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 29 3.8
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 29 3.8
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031) 28 8.7
>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -1
Query: 717 SPELNPLEYKIWQYLEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKA 538
SP+LNP ++ +W +L++ I +T++ I + I ++ RR++
Sbjct: 89 SPDLNPPDFYLWGFLKDNVYQGNPQTI-EKLKTAITAKINAIPKEECIKVIQNFARRVQV 147
Query: 537 CIQNHGGHFE 508
C+Q +GGH E
Sbjct: 148 CLQRNGGHLE 157
>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -1
Query: 705 NPLEYKIWQYLEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKACIQN 526
NP+E +W ++E+ P + ++ KA ++ + + P+RLK I+
Sbjct: 199 NPIE-NLWSIIDEETYRDPQPRTMTSLKSRFKKAWRNVSLSTLSELSHSMPQRLKNVIKA 257
Query: 525 HGGHFE*TLV 496
GGH TL+
Sbjct: 258 KGGHANYTLI 267
>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -1
Query: 717 SPELNPLEYKIWQYLEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKA 538
SP+LNP ++ +W +L++ I +T++ I + I ++ RR++
Sbjct: 89 SPDLNPPDFYLWGFLKDNVYQGNPQTI-EKLKTAITAKINAIPKEECIKVIQNFARRVQV 147
Query: 537 CIQNHG 520
C+Q +G
Sbjct: 148 CLQRNG 153
>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
Length = 267
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -1
Query: 717 SPELNPLEYKIWQYLEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKA 538
SP+LNP ++ +W +L++ I +T++ I + I ++ RR++
Sbjct: 37 SPDLNPPDFYLWGFLKDNVYQGNPQTI-EKLKTAITAKINAIPKEECIKVIQNFARRVQV 95
Query: 537 CIQNHG 520
C+Q +G
Sbjct: 96 CLQRNG 101
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = -1
Query: 717 SPELNPLEYKIWQYLEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKA 538
SP+LNP ++ +W +L++ I +T++ I + I ++ RR++
Sbjct: 313 SPDLNPPDFYLWGFLKDNVYQGNPQTI-EKLKTAITAKINAIPKEECIKVIQNFARRVQV 371
Query: 537 CIQNHG 520
C++ +G
Sbjct: 372 CLERNG 377
>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 153
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = -1
Query: 717 SPELNPLEYKIWQYLEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKA 538
SP+LNP ++ +W +L++ I +T++ I + I ++ RR++
Sbjct: 89 SPDLNPPDFYLWGFLKDNVYQGNPQTI-EKLKTAITAKINAIPKEECIKVIQNFARRVQV 147
Query: 537 CIQNH 523
C++ +
Sbjct: 148 CLERN 152
>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 254
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = -1
Query: 717 SPELNPLEYKIWQYLEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKA 538
SP+LNP ++ +W +L++ I +T++ I + I ++ RR++
Sbjct: 89 SPDLNPPDFYLWGFLKDNVYQGNPQTI-EKLKTAITAKINAIPKEECIKVIQNFARRVQV 147
Query: 537 CIQNH 523
C++ +
Sbjct: 148 CLERN 152
>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1855
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 121 EHGLSQEGCELLTAARAPPKETKQLKSSCFVNPS 20
E GLS +GCE++TA+ K K SS + P+
Sbjct: 1126 ERGLSLDGCEVITASVQLVKRKKLFISSFYRPPT 1159
>SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031)
Length = 753
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 121 EHGLSQEGCELLTAARAPPKETKQLKSSCFVNPS 20
E GLS +GCE++TA+ K K SS + P+
Sbjct: 304 ERGLSLDGCEVITASVQLVKRKKLFISSFYRPPT 337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,161,068
Number of Sequences: 59808
Number of extensions: 376816
Number of successful extensions: 1160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -