Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0790
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    64   7e-11
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    30   1.4  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 30/60 (50%), Positives = 43/60 (71%)
 Frame = -1

Query: 717 SPELNPLEYKIWQYLEEKACSKPSSPIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKA 538
           SP+LNP++Y +W  LE KACSKP   I S  + SL KA  ++D++ +RA +D +PRRL+A
Sbjct: 341 SPDLNPMDYSVWSVLEAKACSKPHRNIDS-LKDSLKKAWDELDINYLRATVDSFPRRLEA 399



 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 642 PIWSHSRTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE 508
           P+WS       K   ++++  +RA +D +P+R++ CI+  G  FE
Sbjct: 411 PVWS-------KVWNELEIPYLRATVDAFPKRVRVCIEADGDIFE 448


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 313 GSVVSDCNYYKT---RSSESTNTFVTCSEQTYFEQFHK 209
           GS  ++C Y+K    R  EST+T  T +EQ +  Q H+
Sbjct: 608 GSDETECEYFKAAMARRGESTSTSTTTTEQQHQRQHHQ 645


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 313 GSVVSDCNYYKT---RSSESTNTFVTCSEQTYFEQFHK 209
           GS  ++C Y+K    R  EST+T  T +EQ +  Q H+
Sbjct: 608 GSDETECEYFKAAMARRGESTSTSTTTTEQQHQRQHHQ 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,961
Number of Sequences: 27780
Number of extensions: 283932
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)