Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0790
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.94 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 60  SFGGARAAVNNSQPS*LSPCSPTYPGETRKASRPTGP 170
           S GG      N   + ++  SP+YPG    +  P+ P
Sbjct: 60  SSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSP 96


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 579 VRAAIDDWPRRLK 541
           + AA+D+WPR L+
Sbjct: 400 ITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 579 VRAAIDDWPRRLK 541
           + AA+D+WPR L+
Sbjct: 453 ITAAVDEWPRLLR 465


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 178 RFLGPVGLDAFLVSP 134
           +FLGPVG     VSP
Sbjct: 50  QFLGPVGFGGVQVSP 64


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 40  CS*AVWSPSEALGRRL 87
           C    WSP  A+ RRL
Sbjct: 196 CLVGTWSPDPAINRRL 211


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 40  CS*AVWSPSEALGRRL 87
           C    WSP  A+ RRL
Sbjct: 196 CLVGTWSPDPAINRRL 211


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 40  CS*AVWSPSEALGRRL 87
           C    WSP  A+ RRL
Sbjct: 196 CLVGTWSPDPAINRRL 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,769
Number of Sequences: 438
Number of extensions: 3598
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)