Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0790
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51160.1 68418.m06343 ankyrin repeat family protein contains ...    31   0.58 
At4g35990.1 68417.m05125 hypothetical protein                          28   5.4  
At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to...    28   7.1  
At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to...    28   7.1  

>At5g51160.1 68418.m06343 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 442

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 340 KLVFASARRGSVVSDCNYYKTRSSESTNTFVTCSEQTYFEQFHKRLLIFFLKK 182
           KL+ A A+RG  +   N  +T S+       TC E+T   Q HK L+ +F  K
Sbjct: 215 KLIEAGAQRGRDIGTTNVERTTSTS------TCQERTMKSQSHKELVKYFTFK 261


>At4g35990.1 68417.m05125 hypothetical protein 
          Length = 129

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -3

Query: 271 SESTNTF--VTCSEQTYFEQFHKRL 203
           SE TNTF  +  S+ T+F++FHK L
Sbjct: 21  SELTNTFDIIVASDCTFFKEFHKDL 45


>At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein
          Length = 449

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 709 IESVRIQDMAILG-GKGVLKAFIPNLESLKDI 617
           IE +R  D  I+  GKGVLK F+ ++ S+ D+
Sbjct: 278 IEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDM 309


>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein
          Length = 402

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 709 IESVRIQDMAILG-GKGVLKAFIPNLESLKDI 617
           IE +R  D  I+  GKGVLK F+ ++ S+ D+
Sbjct: 278 IEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDM 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,475
Number of Sequences: 28952
Number of extensions: 257335
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)