Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0789
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.7  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   4.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.1  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 18/82 (21%), Positives = 32/82 (39%)
 Frame = -2

Query: 491 SGVEYHLERLRPACRY*SLRSTEHQDNLTMVRVKGQSHRILISTAPVQCQPHESGFSQFS 312
           S V+   +  R  CR    +  + Q      ++K +S  IL  T+P     + +  +  S
Sbjct: 111 SRVQVWFKNRRAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVSINNN--TSTS 168

Query: 311 YDVMAPYIVPLRSWRSAPKKIK 246
               +P +      R +P  IK
Sbjct: 169 SSASSPSVTAAPHLRDSPNYIK 190


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +1

Query: 217  ASKNNNGKDIFIFFGADRQLRNGTI*GAITSYENCENPLS*GW 345
            A  N NG +   + G +         G +  YE C N +  GW
Sbjct: 2075 ADNNQNGLNAATYGGGEAGEETRAR-GFLAYYEICTNVIKKGW 2116


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 251 FFLALIASSVMALYRVPLHR 310
           FFLAL    V+++Y    HR
Sbjct: 39  FFLALSIGVVVSIYSKSFHR 58


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 128 CLNPECFFLLKTC 166
           C NPEC F  + C
Sbjct: 547 CNNPECLFDGRDC 559


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,469
Number of Sequences: 336
Number of extensions: 2665
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)