Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0789
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912...    40   8e-04
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211...    36   0.018
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806...    35   0.042
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138...    31   0.39 
01_05_0795 + 25287449-25287967,25288078-25288138,25288640-252887...    29   1.6  
02_02_0026 + 6187860-6187940,6188136-6188207,6188302-6188395,618...    27   8.4  

>01_02_0039 -
           10490522-10490606,10490674-10490810,10491107-10491248,
           10491355-10491419,10491528-10491641,10491846-10492119,
           10492215-10492327,10492405-10492499,10492602-10492662,
           10492774-10493103
          Length = 471

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +2

Query: 365 RLKYDVTGPSPEPLSNYLDAQYYGVISIGTP 457
           RL+ D  G    PL NYLD QY+G I IGTP
Sbjct: 55  RLRADGLGDDIVPLDNYLDTQYFGEIGIGTP 85


>05_01_0273 +
           2115257-2115589,2115706-2115766,2115876-2115970,
           2116072-2116184,2116278-2116551,2116923-2117036,
           2117169-2117233,2117325-2117466,2117547-2117666,
           2118153-2118241,2118349-2118433
          Length = 496

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 368 LKYDVTGPSPEPLSNYLDAQYYGVISIGTP 457
           LK   +   P PL +YL+ QYYGVI +G+P
Sbjct: 57  LKTGSSDSDPVPLVDYLNTQYYGVIGLGSP 86


>01_06_0158 -
           27079262-27079346,27079662-27079750,27080540-27080659,
           27080738-27080894,27081167-27081231,27081323-27081436,
           27082109-27082178,27082412-27082642,27082963-27083039,
           27083143-27083237,27084514-27084574,27084678-27085073
          Length = 519

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 404 LSNYLDAQYYGVISIGTP 457
           L NYL+AQYYG I+IGTP
Sbjct: 90  LKNYLNAQYYGEIAIGTP 107


>05_07_0145 +
           28012268-28012624,28012734-28012794,28013758-28013852,
           28013944-28014056,28014436-28014604,28014677-28014716,
           28014797-28014861,28015485-28015598,28015687-28015751,
           28015927-28016083,28016167-28016286,28016447-28016535,
           28016631-28016715
          Length = 509

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 404 LSNYLDAQYYGVISIGTP 457
           L NY++AQY+G I +GTP
Sbjct: 77  LKNYMNAQYFGEIGVGTP 94


>01_05_0795 +
           25287449-25287967,25288078-25288138,25288640-25288734,
           25288827-25288939,25289480-25289648,25289777-25289816,
           25289906-25289970,25290150-25290263,25290398-25290462,
           25290572-25290725,25290798-25290914,25292489-25292545
          Length = 522

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 395 PEPLSNYLDAQYYGVISIGTP 457
           P  L N+L+AQY+G I +G P
Sbjct: 128 PLALKNFLNAQYFGEIGVGCP 148



 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 459 PQSFKVVFDTGSS 497
           PQ+F VVFDTGSS
Sbjct: 149 PQNFTVVFDTGSS 161


>02_02_0026 +
           6187860-6187940,6188136-6188207,6188302-6188395,
           6188480-6188640,6189053-6189123,6189231-6189312,
           6189748-6189849,6189972-6190027,6190278-6190312,
           6191495-6191579,6191658-6191717,6191819-6191858,
           6192415-6192468
          Length = 330

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 338 HESGFSQFSYDVMAPYIVPLRSWRSAPKKIKISFPLL---FLEAATRRLCNT 192
           H +   Q    + APY VP  +  S  ++ K S PLL   F EA    +C T
Sbjct: 140 HLAELFQVKCIIAAPYFVPYSAPASFERQFKQSLPLLYKYFQEAPLNMVCWT 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,218,608
Number of Sequences: 37544
Number of extensions: 262050
Number of successful extensions: 513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)