Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0789
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                         51   5e-07
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.53 
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             29   2.8  
SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)                      27   6.5  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 28/52 (53%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +2

Query: 311 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTP 457
           M T R    EVG  +E L  KY      G  PEPL NY+DAQYYG I+IGTP
Sbjct: 1   MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTP 52


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 299 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 415
           PL   ++ R H  ++ T LEL+  K   + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 287 LYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 403
           ++ V L  +K +  ++++ GT+L + +LK   T P P P
Sbjct: 244 IHDVLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282


>SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)
          Length = 423

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 375 YFNL---NSSSSVPTS*KWVLAVFIRCNGTLYSAITELAISAKKNKDIFP 235
           YFN+   N ++++P +  + L  F+    T+Y  I ++A +  K K  FP
Sbjct: 89  YFNIKVANGTNNIPWTSPFELETFM--GSTVYKTIAKIAKTVSKGKKYFP 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,427,325
Number of Sequences: 59808
Number of extensions: 303173
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)