Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0789
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   2.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   9.4  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +2

Query: 215 RLLKTTMGKISLFFLALIASSVMALYRVPLHRMKTA 322
           R+++  +GK+ +  +    + V++LY  P+   + A
Sbjct: 76  RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAA 111


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 183 IKYLLRQVFNKKKHSGFRQERISISTYCL*EIDYCYLLIY 64
           I  LL  VF   K SG+   R   ++YCL   D C+   Y
Sbjct: 9   IAVLLAIVFLFDKCSGYPSIRQGTTSYCLGCGDSCHKCKY 48


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 236 GKISLFFLALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPL 406
           GK+++    +  S + ++  V L +          VG  +E+   K DVTG  P PL
Sbjct: 289 GKLNVNEFYMAFSKLYSVSVVSLDKSLEVNHISARVGDNVEI---KCDVTGTPPPPL 342


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 407 SNYLDAQYYGVISI 448
           +NY   QYY +I+I
Sbjct: 103 TNYKKLQYYNIINI 116


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 407 SNYLDAQYYGVISI 448
           +NY   QYY +I+I
Sbjct: 103 TNYKKLQYYNIINI 116


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 407 SNYLDAQYYGVISI 448
           +NY   QYY +I+I
Sbjct: 103 TNYKKLQYYNIINI 116


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 407 SNYLDAQYYGVISI 448
           +NY   QYY +I+I
Sbjct: 103 TNYKKLQYYNIINI 116


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 407 SNYLDAQYYGVISI 448
           +NY   QYY +I+I
Sbjct: 103 TNYKKLQYYNIINI 116


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 407 SNYLDAQYYGVISI 448
           +NY   QYY +I+I
Sbjct: 103 TNYKKLQYYNIINI 116


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 407 SNYLDAQYYGVISI 448
           +NY   QYY +I+I
Sbjct: 107 TNYKKLQYYNIINI 120


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 407 SNYLDAQYYGVISI 448
           +NY   QYY +I+I
Sbjct: 103 TNYKKLQYYNIINI 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,214
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)