Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0789
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62290.1 68414.m07027 aspartyl protease family protein contai...    40   0.001
At4g04460.1 68417.m00648 aspartyl protease family protein contai...    39   0.002
At1g11910.1 68414.m01374 aspartyl protease family protein contai...    37   0.009
At3g59300.1 68416.m06610 expressed protein hypothetical protein ...    29   1.7  
At1g66680.1 68414.m07579 S locus-linked protein, putative simila...    29   2.3  
At5g59400.2 68418.m07444 expressed protein predicted protein, Ar...    27   9.3  
At5g59400.1 68418.m07443 expressed protein predicted protein, Ar...    27   9.3  
At3g59140.1 68416.m06593 ABC transporter family protein putative...    27   9.3  
At2g29720.1 68415.m03612 monooxygenase family protein nearly ide...    27   9.3  

>At1g62290.1 68414.m07027 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 513

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 401 PLSNYLDAQYYGVISIGTP 457
           PL NYLDAQYYG I+IGTP
Sbjct: 80  PLKNYLDAQYYGEIAIGTP 98


>At4g04460.1 68417.m00648 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 508

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 401 PLSNYLDAQYYGVISIGTP 457
           PL NYLDAQYYG I+IGTP
Sbjct: 78  PLKNYLDAQYYGDITIGTP 96


>At1g11910.1 68414.m01374 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 506

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2

Query: 404 LSNYLDAQYYGVISIGTP 457
           L NYLDAQYYG I+IGTP
Sbjct: 74  LKNYLDAQYYGEIAIGTP 91



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +3

Query: 459 PQSFKVVFDTGSS 497
           PQ F VVFDTGSS
Sbjct: 92  PQKFTVVFDTGSS 104


>At3g59300.1 68416.m06610 expressed protein hypothetical protein
           T2J13.20 - Arabidopsis thaliana, PIR:T46116
          Length = 459

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 479 YH-LERLRPACRY*SLRSTEHQDNLTMVRVKGQSHRILISTAPVQCQPHE-SGFSQFSY 309
           YH LE L+P+ R    + +  +  +    V+  S  +L+    + C+PH+ + +S+F Y
Sbjct: 97  YHPLEDLKPSKRVQETKLSASE--VARTTVEANSSAVLVFPGAIHCEPHDHNSWSEFKY 153


>At1g66680.1 68414.m07579 S locus-linked protein, putative similar
           to S locus-linked protein SLL2 [Brassica napus]
           GI:1518113
          Length = 358

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 185 ELNIYCDKFLIKKNILDLGK-NGFLFQRTAYE 93
           E+N   DK+L   N+LDLG  NG L  + A E
Sbjct: 159 EVNDQADKYLSSWNVLDLGTGNGLLLHQLAKE 190


>At5g59400.2 68418.m07444 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 301

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 361 VEIKIRCDWPFTRTIVKLS*CSVLRSDQYRHA 456
           VE+K+R  W  ++++VK   CS+LR   Y  A
Sbjct: 100 VELKLR--WYGSKSVVKYPRCSLLRQSTYADA 129


>At5g59400.1 68418.m07443 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 299

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 361 VEIKIRCDWPFTRTIVKLS*CSVLRSDQYRHA 456
           VE+K+R  W  ++++VK   CS+LR   Y  A
Sbjct: 100 VELKLR--WYGSKSVVKYPRCSLLRQSTYADA 129


>At3g59140.1 68416.m06593 ABC transporter family protein putative
           multi resistance protein mrp - Arabidopsis thaliana,
           EMBL:ATMRPPROT
          Length = 1453

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 133 KSRMFFFIKNLSQ*IFNSFRVLQSRLVAASKNN 231
           K  +FFFI +L+Q  F   ++LQ+  +AA+ +N
Sbjct: 888 KGYIFFFIASLAQVTFAVGQILQNSWMAANVDN 920


>At2g29720.1 68415.m03612 monooxygenase family protein nearly
           identical to CTF2B [GI:4164578][Plant Physiol. 119, 364
           (1999), PGR99-008]
          Length = 427

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 437 LRSTEHQDNLTMVRVKGQSHRILISTAPVQCQPHESGFS 321
           LRS + +DN     V+G   R+L+ T   Q  P    FS
Sbjct: 123 LRSFKFKDNDQSQEVRGVERRVLLETLASQLPPQTIRFS 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,767,160
Number of Sequences: 28952
Number of extensions: 215557
Number of successful extensions: 536
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)