Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0788
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.19 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.5  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +2

Query: 440 DSLEEIKKIADNAKKMGLITSLIRGCGPYPDCTKFNNSFGCRTSTERHYR 589
           +SL E+ K ++ +K   L+ ++         C   +    C+++ + HYR
Sbjct: 106 ESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYR 155


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/58 (24%), Positives = 22/58 (37%)
 Frame = -3

Query: 487 HFLCIVCNFFYFL*RVNFKGHFSLSCHLPGFQTFRVFF*CFLKSSNCCMTALSCYFAF 314
           H L ++C + +F   + F  H    C    F    +F  C L      +  L C + F
Sbjct: 159 HLLFLLCIYHFFCAFIIFTMHLLFCCAFIFFNMHLLFLLC-LDYFTLHLLFLPCIYYF 215


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = +3

Query: 561 VGPAPKDIIDKVTGHLKL 614
           + P P+D ++ + GH+++
Sbjct: 218 IPPEPEDYVEDLVGHIEV 235


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 411 VICQAFKPSGSFFSAFSK 358
           VIC   +PS   +S F K
Sbjct: 272 VICTIHQPSSEVYSMFDK 289


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 411 VICQAFKPSGSFFSAFSK 358
           VIC   +PS   +S F K
Sbjct: 272 VICTIHQPSSEVYSMFDK 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,993
Number of Sequences: 336
Number of extensions: 3342
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)