Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0788
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom... 78 1e-15
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 30 0.36
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 29 0.84
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 28 1.1
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.6
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 26 4.5
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 7.8
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 7.8
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 7.8
>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 77.8 bits (183), Expect = 1e-15
Identities = 38/102 (37%), Positives = 58/102 (56%)
Frame = +2
Query: 215 MKMFSNASETVKKFVSNEEYKLVLVVRTDLSMGKGKIAAQCCHAAVGAFEKALKKDPEGL 394
+ M S ++ + K+VLVVRTDL M KGKIAAQC HAA+ ++ A DP+ +
Sbjct: 72 LDMLKGNSSLAALALAEGQTKMVLVVRTDLGMTKGKIAAQCAHAALACYKIASAVDPDLV 131
Query: 395 KAWQMTGQAKVALKIDSLEEIKKIADNAKKMGLITSLIRGCG 520
+ W+ GQAK+ L+ + E ++ + A +GL +I G
Sbjct: 132 RIWENAGQAKITLQAQTEETLELLQAQAMSLGLCARVIHDAG 173
Score = 51.2 bits (117), Expect = 1e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 513 DAGRTQIAPNSITVLGVGPAPKDIIDKVTGHLKL 614
DAGRTQIA S TVLG+GP P +I++VTG LKL
Sbjct: 171 DAGRTQIASGSATVLGIGPGPVSVINEVTGSLKL 204
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 68 NIFNYLHTFCLLKTLKISPKHKMTFDMSFYTGLSCGICIGLSI 196
+IF+ + LL+T +P + + MSF+ L GIC GL++
Sbjct: 55 HIFHGKNRHQLLRTCHFTPSKRHSA-MSFFEALGAGICAGLAV 96
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 0.84
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 454 NKKNCRQCKENGLNHIF 504
+KKN Q +ENGLNH+F
Sbjct: 166 SKKNKSQLEENGLNHLF 182
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 305 SMGKGKIAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQA 421
S+G ++ A+ H A+ F+ AL+ P+ AW G+A
Sbjct: 655 SLGVLELNAKNFHKAIVHFQSALRISPKDTNAWSGLGEA 693
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 440 DSLEEIKKI-ADNAKKMGLITSLIRGCGPYPDCTKFNNSFGCRTSTERHYRQS 595
+ LE+ K I ADN K LI + P P +SF RT +ER Q+
Sbjct: 346 NDLEKWKPIVADNRKSDQLIFPMNETARPVPSNNGLASSFEPRTESERKMHQA 398
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 174 VFVSAYQYLRFEST*RCFLMPVKLLKSLYRMKSTNW 281
V+V Y +L +CF + K +++LYR S W
Sbjct: 36 VWVEIYHHLEKGLLQQCFNLVKKNMEALYRQSSFGW 71
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 671 IRNNKFT*K*TNFENKLSQQLK 606
++N++FT + NFEN+ Q+LK
Sbjct: 801 MQNDEFTDESVNFENRWKQELK 822
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 640 PILKTNYHSNLR*PVTLSIMSFGAGPTPK 554
P T YH P + S+ S+G G TP+
Sbjct: 408 PSPSTVYHQVFYPPTSTSVSSYGLGKTPQ 436
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 65 PNIFNYLHTFCLLKTLKISPKHKMTFDMS 151
P I+N LH FCL + L + + TF +S
Sbjct: 260 PLIYNILHKFCLYQRLNL--LSQQTFQLS 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,258
Number of Sequences: 5004
Number of extensions: 56219
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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