Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0788
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0109 - 25624241-25624290,25624648-25624687,25624959-256250...    75   7e-14
04_04_1403 - 33292878-33292927,33293012-33293038,33293129-332931...    51   1e-06
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007...    28   8.0  

>05_06_0109 -
           25624241-25624290,25624648-25624687,25624959-25625031,
           25625123-25625200,25625533-25625569,25625892-25625952,
           25626110-25626328,25626400-25626456
          Length = 204

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 34/88 (38%), Positives = 53/88 (60%)
 Frame = +2

Query: 257 VSNEEYKLVLVVRTDLSMGKGKIAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQAKVALK 436
           +  EE K+VLVVR DL M  GKIA+QC HAA G + + +  +   L+ W+  GQAK+ L 
Sbjct: 85  IGGEELKMVLVVRKDLKMRAGKIASQCAHAATGLYAELMASNRGLLRQWEQFGQAKIVLT 144

Query: 437 IDSLEEIKKIADNAKKMGLITSLIRGCG 520
             + +E+ +I + A+  G+ T ++   G
Sbjct: 145 CKNQQEMNRIKETAEHRGIPTFVVADAG 172



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/35 (62%), Positives = 23/35 (65%)
 Frame = +3

Query: 513 DAGRTQIAPNSITVLGVGPAPKDIIDKVTGHLKLL 617
           DAGRTQ+   S TVL VGP  K  ID VTG L LL
Sbjct: 170 DAGRTQVQAGSKTVLAVGPGRKADIDSVTGKLSLL 204


>04_04_1403 -
           33292878-33292927,33293012-33293038,33293129-33293198,
           33293672-33293741,33294441-33294499,33294613-33295011
          Length = 224

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 32/85 (37%), Positives = 44/85 (51%)
 Frame = +2

Query: 266 EEYKLVLVVRTDLSMGKGKIAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQAKVALKIDS 445
           E++K+VLVVR DL MGKGKIAAQC                     W+  GQ KV +KI+S
Sbjct: 129 EDFKMVLVVRNDLKMGKGKIAAQC--------------------RWERCGQVKVVVKIES 168

Query: 446 LEEIKKIADNAKKMGLITSLIRGCG 520
            E++  +   AK + + T +    G
Sbjct: 169 EEDMLVLQGRAKSLNIPTHITIDAG 193



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 25/37 (67%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
 Frame = +3

Query: 510 VDAGRTQIAPNSITVLGV-GPAPKDIIDKVTGHLKLL 617
           +DAGRTQIAPNS TV+ + GPA  D++D VTG LKLL
Sbjct: 190 IDAGRTQIAPNSRTVMAILGPA--DMVDDVTGGLKLL 224


>03_06_0603 +
           34999083-34999703,35000092-35000177,35000400-35000796,
           35000906-35001154,35001522-35001749,35002524-35002973,
           35003848-35003961,35004171-35004216,35004408-35004574
          Length = 785

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 239 HWH*KTSSCTFESQILIGRYKYRSLGQCKKTY 144
           HWH ++ S TFE ++L    K  ++G+ +  Y
Sbjct: 730 HWHVQSYSLTFEPRLLFILSKLTNIGKAEDDY 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,181
Number of Sequences: 37544
Number of extensions: 310610
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)