Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0788
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53146| Best HMM Match : UPF0099 (HMM E-Value=3.8e-10)               78   8e-15
SB_54754| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   4e-09
SB_54159| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_38426| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              30   1.5  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.2  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               28   8.2  

>SB_53146| Best HMM Match : UPF0099 (HMM E-Value=3.8e-10)
          Length = 250

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 34/65 (52%), Positives = 44/65 (67%)
 Frame = +2

Query: 242 TVKKFVSNEEYKLVLVVRTDLSMGKGKIAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQA 421
           T      + EYK++LVVR DL MGKGK+AAQCCHAAVG   + LK +P+ L+ W+   Q 
Sbjct: 58  TTYTMAGSGEYKMILVVRQDLGMGKGKVAAQCCHAAVGLCRQLLKNNPKVLRMWENAAQP 117

Query: 422 KVALK 436
           KV +K
Sbjct: 118 KVVVK 122


>SB_54754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
 Frame = +2

Query: 215 MKMFSNASETVKKFVSNEEYKLVLVVRTDLSMGKGKIAAQCCHAAVGAFEKALK-KDPEG 391
           +KM+    ++   F  ++ YK+  VV ++L+MG GK+AAQ  HAAVG +   L+ +D  G
Sbjct: 78  VKMYPETEDSEAGF--SDPYKMAFVVNSELNMGVGKVAAQVGHAAVGLYRALLQDQDDLG 135

Query: 392 --LKAWQMTGQAKVALKIDSLEEIKKIADNAKKMGLITSLIRGCG 520
             L +W+ +G  KV LK ++   +  +   AK++ L   L++  G
Sbjct: 136 HMLMSWEDSGGMKVVLKGENTAHLLDMETQAKRLQLPFYLVQDAG 180



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/35 (57%), Positives = 28/35 (80%)
 Frame = +3

Query: 513 DAGRTQIAPNSITVLGVGPAPKDIIDKVTGHLKLL 617
           DAGRTQIA  S+TVLG+  A ++ ++K+TG L+LL
Sbjct: 178 DAGRTQIASGSVTVLGIFGATEE-VNKITGKLRLL 211


>SB_54159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = +2

Query: 95  CLLKTLKISPKHKMTFDMSFYTGLSCGICIGLSIFAIRKYMKMFSNASETVKKFVSNEEY 274
           C+L  + ++ K ++ F+ S +  L C     + + AI   + +   A     K+ S++E 
Sbjct: 66  CVLVKVSVTVKCEIFFNRSPFLDLQCPETTTIQVTAILSELIIHIRAHSRTDKYASHKEN 125

Query: 275 KLVLVVRTDLSMGKGK 322
           K   + R++L + KGK
Sbjct: 126 KHQKLGRSNLRLTKGK 141


>SB_38426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = +2

Query: 95  CLLKTLKISPKHKMTFDMSFYTGLSCGICIGLSIFAIRKYMKMFSNASETVKKFVSNEEY 274
           C+L  + ++ K ++ F+ S +  L C     + + AI   + +   A     K+ S++E 
Sbjct: 149 CVLVKVSVTVKCEIFFNRSPFLDLQCPETTTIQVTAILSELIIHIRAHSRTDKYASHKEN 208

Query: 275 KLVLVVRTDLSMGKGK 322
           K   + R++L + KGK
Sbjct: 209 KHQKLGRSNLRLTKGK 224


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +2

Query: 455  IKKIADNAKKMGLITSLIRGCGPYPDCTKFNNSFGCRTSTERHYRQSHRSP*VAVIICFQ 634
            +KK   N    G + S+ +    +      + S GC +  ERH+++ H  P V +     
Sbjct: 1243 LKKFDGNVGISGTLKSMDQD--QFSSAELLDQSIGCNSQEERHHQRRHHKPEVILEYSLN 1300

Query: 635  NW 640
             W
Sbjct: 1301 QW 1302


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 530  DCTKFNNSFGCRTSTERHYRQ 592
            DC  F+  FGCR  +E H  Q
Sbjct: 952  DCMNFDGGFGCRPGSESHAGQ 972


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 104  KTLKISPKHKMTFDMSFYTGLSCGICIGLSIFAIRKYMKMFS 229
            KTL   PK  + F++ F+T  + G+  G    + +++ +MF+
Sbjct: 1634 KTLTFKPKFDIPFELPFFTPTASGVIAGSYERSGQEFEEMFT 1675


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,498,499
Number of Sequences: 59808
Number of extensions: 390693
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)