Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0788
         (690 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   5.2  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   5.2  
AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.           23   9.1  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 221  MFSNASETVKKFVSNEEYKLVLVVR---TDLSMGKGKIAAQCCHAAVGAFEKALKKDPEG 391
            +F  A + +  FV N+++  V +       L +  G+I A   +   G   ++   DP+G
Sbjct: 2565 VFVYADDRLVGFVRNDQFYSVWLDHERSVRLVIKNGEIVAAYDYLPYGELLRSYGDDPDG 2624

Query: 392  LKAWQMTGQ 418
               ++ TGQ
Sbjct: 2625 HLDYRFTGQ 2633


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 221  MFSNASETVKKFVSNEEYKLVLVVR---TDLSMGKGKIAAQCCHAAVGAFEKALKKDPEG 391
            +F  A + +  FV N+++  V +       L +  G+I A   +   G   ++   DP+G
Sbjct: 2566 VFVYADDRLVGFVRNDQFYSVWLDHERSVRLVIKNGEIVAAYDYLPYGELLRSYGDDPDG 2625

Query: 392  LKAWQMTGQ 418
               ++ TGQ
Sbjct: 2626 HLDYRFTGQ 2634


>AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.
          Length = 194

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 364 LKSSNCCMTALSCYFAFTHT 305
           L +SNCC   L C    T T
Sbjct: 50  LAASNCCSIVLCCVLLLTLT 69


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,122
Number of Sequences: 2352
Number of extensions: 13712
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)